Array 1 302113-299144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJN010000043.1 Pasteurella multocida strain 86_1913 Contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 302112 28 100.0 32 ............................ TTTAACGATTCCATATTTTTTATTAATTTTAA 302052 28 100.0 32 ............................ ATATTAATGAAATCACTAGTCGTAGTATCATT 301992 28 100.0 32 ............................ TGTACTCCAAGTCCATTTATTATCTTTAATGT 301932 28 100.0 32 ............................ AGTTTCGCGATTAGTAAAAGTACTAACTTTTT 301872 28 100.0 32 ............................ TTGTACCTGCTTATCGAGGCGTGACTTCATTA 301812 28 100.0 32 ............................ ACTTGTGCTCACAATGACCGTAAATTTCAGCA 301752 28 100.0 32 ............................ ACATGGGTGCTTTTTGTTTTTGGTAATTATCT 301692 28 100.0 32 ............................ CGAATCACTGTGCCGAAATTGCACAAAGCGGA 301632 28 100.0 32 ............................ AAAATGAGAAAACCATTCGTTTTCTGCGAGAA 301572 28 100.0 32 ............................ TGTCGGCGATACTGCAATTGCGAGTTGTGAAA 301512 28 100.0 32 ............................ AAAAAACAAATTTTGTCACAAAATGAATATAT 301452 28 100.0 32 ............................ ACGTTCCAATAAGGTATGTTCTTCTTTCAAAT 301392 28 100.0 32 ............................ TTCACACCAATTCGGCATACTCTTTCTCCAAT 301332 28 100.0 32 ............................ CGCCGTATCTCTGCACACGACAAGAAAGTTAC 301272 28 100.0 32 ............................ TTATGAATTTAAAGAAAACGGCAAGCCGTCTT 301212 28 100.0 32 ............................ GCCCACAAACTTTCTTCAACTGTTCCCGCGTA 301152 28 100.0 32 ............................ GTAGTTTTATTGCTGAACATCGTCATTTTACA 301092 28 100.0 32 ............................ TGCATTATACATTCCAACAGAAATCCATTTAG 301032 28 100.0 32 ............................ CGAGCGTGCAGTTGGCGTTAGACGGCAAGCCG 300972 28 100.0 32 ............................ ACGAGTTTGTGCAATGATTTTAAGCATTGGCG 300912 28 100.0 32 ............................ AGTTGAAGTATCAGAAATTTTAATAAAGCAAT 300852 28 100.0 32 ............................ CGTGTAATAAGTTACAAATTCACCGTTTATAA 300792 28 100.0 32 ............................ TGATGTTAGAGATGGCTATGTAGGTTTTCAAA 300732 28 100.0 33 ............................ CCAAAAACTATAATTTTCTTCAAATTCCTTATC 300671 28 100.0 32 ............................ TGGTTCTTTTGGTTGAGTTTTTTATCGGCTAC 300611 28 100.0 32 ............................ TCAATCTAGCGACAATATGAAATCACGCCATT 300551 28 100.0 32 ............................ TAACATGCCTCGCACTTATGCAAGAGTTAGTT 300491 28 100.0 33 ............................ CAACAAAAAGCCAGTCATGGATGCCAAAGCTAT 300430 28 100.0 32 ............................ TTATAGATTAATGCGTAAATCTCACCATCAAT 300370 28 100.0 32 ............................ GAAAGCGAAAACGCAAGGCGAAAGCGCGCCAG 300310 28 100.0 32 ............................ ACATTGTTTTTATCTTGCCACTTTCTTGTTCT 300250 28 100.0 32 ............................ CGCGTAAAGTGGGATTTTTATTTTGAGAGAAG 300190 28 100.0 32 ............................ TATACTCACCCATTACTTTTTCAAAATAACGC 300130 28 100.0 32 ............................ ATTGGAATACGCAGTGTATTCTAACTCTACTG 300070 28 100.0 32 ............................ TTAATTTGCCGTTTTATCTCAAAATTATGAAA 300010 28 100.0 32 ............................ ACTATTGAAGCTACCTATGAACATCATCCAGT 299950 28 100.0 32 ............................ TACAGCGTCATAGTGCTTAACTTTATTTAATT 299890 28 100.0 32 ............................ TAGTGAACTCAAATCAATCTCACCAGTAATAT 299830 28 100.0 32 ............................ GTTTTTCCTTATGACAAAAACGGTATTCCACT 299770 28 100.0 32 ............................ GGTCGTAGCAGAATACGCGGGGACAGCTTACA 299710 28 100.0 32 ............................ TGTTAATCTACAATCAGTTGTAAAATTATTTT 299650 28 100.0 32 ............................ GACATTAATGTCGGAGACATCATTTAACAGAT 299590 28 100.0 32 ............................ ACAGTTCACGCACGCGAATGTTACACAACCGC 299530 28 100.0 32 ............................ GACAGGCACAATGCACGCATTTTTAGCACAAA 299470 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 299410 28 100.0 32 ............................ CGAGTAAGTGTGAATCCACGCCATTTATTTTT 299350 28 100.0 32 ............................ ACATTTGGTCCAAGGTGGTGATAATTCTTGGC 299290 28 96.4 32 ............G............... TCCAGAGTGTTACAAAACGGCGGAACAGTTAT 299230 28 100.0 32 ............................ AGATGACTTATGTGTCTGATCGCTCCGAAGAA 299170 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGTAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTT # Right flank : TGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAGGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15917-17205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJN010000058.1 Pasteurella multocida strain 86_1913 Contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15917 28 100.0 32 ............................ GATAAAAAATACTGTACAAAAGAACAGCAAAA 15977 28 100.0 32 ............................ GGTCTATCCCGCAGTGCCGTTGCCCGTGACGA 16037 28 100.0 32 ............................ TCCAAGCTCTCCTCCAAGTTCTAATTCTGGCG 16097 28 100.0 32 ............................ TTTTAATCGTTCCACAGTTGAAGTTAAGCCTT 16157 28 100.0 32 ............................ AAAAGCAGTGCGCGATTCTTACTATCGTAACG 16217 28 100.0 32 ............................ GTGAGTTCATAAAGGTGTGAATTAAGGGATTT 16277 28 100.0 32 ............................ AATATGTTTAAAAGCGATAGTTTGGCGAGTGA 16337 28 100.0 32 ............................ TTAGACAAAAAGCTGTTGCATTTGAAGCCAAA 16397 28 100.0 32 ............................ ATATATCTGCGTGGGTAAATGTTCCAATAATT 16457 28 100.0 32 ............................ ATTTGAAGATTTTTTGACTTTTTCACCGTCTT 16517 28 100.0 32 ............................ AGAAATACGCCACGTTTTTGATAAAATTTGAG 16577 28 100.0 32 ............................ AAAAGTGATTTGCACGCAGGATTTAGAAGTTG 16637 28 100.0 32 ............................ AAATTATGAAAAATCAATATTTAGCACTAGCT 16697 28 100.0 32 ............................ ATTTTCTACTTAGCTCCCTGTCGTATTCGTCT 16757 28 100.0 32 ............................ AAGGGGCGCACCCCTTGACCCCTTTAAACCGA 16817 28 100.0 32 ............................ ACGAACGACGACATAAGCGCATAGTAAACCCC 16877 28 100.0 32 ............................ AACTTTTGTGCAACTTCAGGCTTTAACTTAAT 16937 28 96.4 33 ....G....................... AAGTTGATAATTCATCCAATGTCATTTGTTCAA 16998 28 100.0 32 ............................ GAAGGTCAATAATCTAAAAGGGTCTATTCAAG 17058 28 100.0 32 ............................ AGTTCGTGAGTGCACTCTCGATGTTGTCGATA 17118 28 100.0 32 ............................ AGATTTGTCTATGAGTTCGACTTCGATAATGA 17178 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACTGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGACGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //