Array 1 117169-116394 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NJOB01000004.1 Bifidobacterium breve strain W56 scaffold10, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=================================	====================================	==================
    117168	    33	 100.0	    34	.................................	CGTGACGAAATCGGCCAGAACATCGCGAAGGGGT  	
    117101	    33	 100.0	    35	.................................	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 	
    117033	    33	 100.0	    33	.................................	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT   	
    116967	    33	  97.0	    34	...................A.............	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT  	
    116900	    33	 100.0	    33	.................................	CTTTCATCTGATTGGAACGACGCTTCCGATTCT   	
    116834	    33	  97.0	    35	.....................A...........	AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT 	
    116766	    33	 100.0	    35	.................................	ATGGCCGTCAACAACGGTTCCGCGTTGGCGCTGGC 	
    116698	    33	 100.0	    34	.................................	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC  	
    116631	    33	 100.0	    35	.................................	TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 	
    116563	    33	  97.0	    35	............T....................	CTGTACGGCAAGGCTCAGACCGGCATTGAGGGCTG 	
    116495	    33	 100.0	    36	.................................	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC	
    116426	    33	  81.8	     0	.............T...A.......G..CCT..	|                                   	
==========	======	======	======	=================================	====================================	==================
        12	    33	  97.7	    35	GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	                                    	       

# Left flank :   TCCGGCGATTTGGAACTGGTCGAAGGCGAGTACGAGCTCATCAACCGTGTGGAGGAGGAGAATGCCGCCGAGGCCGCTGCTTCGGTGTCCGCCGCTCTGCCGACCGGTGGCTTCGTGATCCTCGACACCGCTCTGGATGACGACCTGCTGGCTGAAGGCTACGCCCGCGACGCCATCCGCGTCGTGCAGGACGCCCGCAAGGCCGCCGATCTGGACATCGCCGATCGCATCTCCCTGGTGCTGACCGTGCCGGCTGTTGATGTGGCCAAGGTCGAGCAATTCCGCAATCTGATCGCCCATGAGACGCTGGCTACCTCCTTCGAAGTGAAGGAAGGCACCGAGCTGGCCGTTGAGGTCGCCAAGGCATGAGATCGCTGAATTGAGTTTGCTGAGTTGTCAATATTGAACGTTGGGACAGCCCAGTAAACTCGATACGCCAATTGATATGAGCTTGTCGTTGTGGTTGGGATTGTGTGGATTCCAGCCACAACGACAAGTTT
# Right flank :  GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC

# Questionable array : NO	 Score: 9.15
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [7,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-8.40,-8.50] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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