Array 1 4002-3527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRN010000029.1 Nocardia farcinica strain N-23 NODE_29_length_23595_cov_36.497869, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4001 37 100.0 38 ..................................... GAGGCGTCCCGAACGGGCCCGCTCGTGATGAGCAGGTC 3926 37 97.3 39 ...............................T..... TCCAGGATGAACGCCGCGGTGCGATGACGGTCCGGATCG 3850 37 100.0 37 ..................................... TTCAACTCCTGCTCGTTATCCGGGTGGACGAGGTTCA 3776 37 100.0 32 ..................................... GATTTGTCGGCGGTCCGGAGAGTTTCCGGCGT 3707 37 100.0 35 ..................................... GCCAGCACGGCCGAAGCAGTCATCCGTACGCTATG 3635 37 100.0 34 ..................................... GGGCTTGTTCGTCCGTCTGGATCTCGTTACTGAG 3564 37 94.6 0 ...............................T.G... | G [3530] ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 98.8 36 CTCGCTACGCACAGCCCGACCGACAGGGCATAGAAAC # Left flank : GAAGACCGCCGCATCGCCCACTTCCCCTCGACAACGCAGCCGGCCCGCGTCCGTGAACACCACACCCCCGCCCCGCCGTTGACCCACCACGGCATCACCATCCCCCTCGCCCGCGTCACCTACCGCGACACCGCCGAAAACCTCCCCGACCCAACCCCCGACACCCATCTCAACGTCTCCCGCATCATCGCCTTCGCCCACCCCCAACGCACCGACCTCGTCTTCCCACTCGACGAAGTCACAGACACCCGAGGCCAGATCATCGGATGCCGAGGATTCGGCACCGCGAACACCGACACTGAACCCCCATGACCCCCACCTGTACAGCGCTCGCACGAAACCTTGAAAAACGCCTCGGTGCTCGCAACCACATCACCGCAGCTCACAGCCGCTGCAGACCCCGTATCCGGCACGATCAAGATCGAACCAACGCCCGCCGTGACGAGGTGCTCGCAAAGTGGTACATTCACGCAGGTCACAGCCACCGAAAATTGGTAGCC # Right flank : GCCATGACGCCCTGTACCGCGGGCGGTCCCGGCGGTGTGCGATCTCGGCCCCGGATGCCGGAATAGCGGTGTGCTGGCAGAATGACGCGGAGTGGTTGCCGGGGCGGTCATCGGATTCCGTGATCCCGATCGTCGCGGTGAACTCCTGGATGGGGCGAATCATGGGCATTCTCTACGCGAGGGCATTCACCCAGCAAGCGTTGCTGGACGCTTGGGAGATCGTGCGGGACAACGCGTTGGCGGATGGGCGTTTCGATCCGGCGGTGGAGCGTTTCGAGGCGGACGCTGCTCGGCGGATCGCCGATATCGCTGCTGAATTGGCGGCGGGGGAGTGGAATCCGGGTGCGTTGTTCCGGGTCGAGATCCCGAAAACCTCTGGTGGAGTGCGCAGGTTGAGTGTGCCGCGTCTCGAGGATCGTGTGGTCGAGCGGGCGTTGCTGGCGGTGTTGGATCCGGTGATCGATCCGCGCCTGTTGCCGTGGAGTTTCGCGTATCGGAAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCTACGCACAGCCCGACCGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 263206-263715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRN010000002.1 Nocardia farcinica strain N-23 NODE_2_length_1163156_cov_38.376348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 263206 28 100.0 33 ............................ CTCATCCACCACCATCAGCGACGTGCGGCCGTG 263267 28 100.0 33 ............................ CGACGCGATGGCCCTTCTCGAGCAGGAAGGGTT 263328 28 100.0 33 ............................ CCAGCCGCAGACGACGACCGCCGAGCAGGTCCG 263389 28 100.0 33 ............................ CCGCCTGAAACCATCGCAGAGAGGATCGAGCGC 263450 28 100.0 32 ............................ CTAGGCCACCTTGCGGACCCATCCAACCAACA 263510 28 96.4 33 ........G................... CGGCGGACCAGCGAGCCCACCGAACTCCCTTGG 263571 28 100.0 33 ............................ GTAGACGCTGGCGACCGAGTGCCCGAATCCGGA 263632 28 96.4 26 .............A.............. CTGGGTGGCGACGATGACCTCGGTAC Deletion [263686] 263686 28 100.0 0 ............................ | GA [263709] ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCACGTGCCCGGCCCGACCGAGTCATACCTTCCGTGCTCCCGCCCGTGTGCGGGGGGGGGGGGTGAGCCCCGAAGCTAGTTGCCCGTGAGTGGGACCGACGCCTGAAACGAGCACTCGGTCGAAGACTGTCGCGACCCGAACCAATACGTTGTCGTCCACAACCGGCGGCGGCGAGACGCGAAAGGTCTTCGTTCATGCGGACTGCTGACTGGGCCGTGGGTCACCGCGATCGGGGATTCTCTGCGATGGGTCCGGTCGCAGCTCCGCGCGCAAAGGCCGGCGTGAGGGTTGCGCGCCGACCCACACCGGCTTGCGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 373634-374576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRN010000002.1 Nocardia farcinica strain N-23 NODE_2_length_1163156_cov_38.376348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 373634 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 373695 29 100.0 32 ............................. TCGACGTAGATCCGCGCATCCCCGGCGGCGAT 373756 29 100.0 32 ............................. AGGTGATCGGCCTCGGCGTGCAATCCTCAGTC 373817 29 100.0 32 ............................. ATTCCGGAGAGGGTGTCGGGCAGGTCGTAGAG 373878 29 100.0 32 ............................. ACGCAGAACAGTTGACGGCAGCGGCGGCATCG 373939 29 100.0 32 ............................. GAGACCACCGACCACAACACCACCGACAGCAA 374000 29 100.0 30 ............................. TTCACGCACGGCTGCCTGTACGCGGACTGG 374059 29 100.0 32 ............................. GAGGCGCTGTCCGCGCGACGAGAGCTGGCGCG 374120 29 100.0 32 ............................. GGGGTGGCGCCGATCTGCCCGCGCAGGAACGC 374181 29 100.0 32 ............................. GTCGCCGCTGGACTTCCGCCCGACACCGGCCG 374242 29 100.0 32 ............................. AACGGCACCGAGGGCTGGTCCCCGCGCCAGTA 374303 29 100.0 32 ............................. CGCGGCGACGTCCCGGTGTGGTGGTACGGGTT 374364 29 100.0 32 ............................. TTGGCGGACGACGGCCGTGCTGGTGCGGTTCT 374425 29 100.0 32 ............................. CGCCCCTGAATCCCGATTGGCCGCCACTGTGG 374486 29 100.0 32 ............................. CCGATCCGGGAGGTGACCCGGAAGGCAGGCAA G [374494] 374548 29 93.1 0 .........C................T.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GGCGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGACGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGTTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAATCCCGCGACCTGGTCGCGTTCGGGCTGGGCAAGGTCGTACCCGCGCACGCGGAACCGCCTTCTTCGGTCGGCGCGGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATGCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCACACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGGCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 112359-112208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRN010000014.1 Nocardia farcinica strain N-23 NODE_14_length_122170_cov_39.528707, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112358 29 100.0 32 ............................. GCCTGCGCGTTCGGTGACAGGTCGGCCAGCGC 112297 29 100.0 32 ............................. CCTCCCGGAAGCGCGTGCACGCCGCCGCCGCT 112236 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGGATCACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGCTGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCGTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGACGGCGGCCTGTCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCTATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCTTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCGCGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 103460-102454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRN010000017.1 Nocardia farcinica strain N-23 NODE_17_length_107376_cov_37.465869, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103459 29 100.0 32 ............................. TCGCGCAAGAACGGCTCCGAGGCCCGGCGCAA 103398 29 100.0 32 ............................. ACGACTCTCGGCCGCACCACGGCGACGATCCG 103337 29 100.0 32 ............................. CGCGACTTCCTGTGCGTGCGGGCAGACCATAA 103276 29 100.0 32 ............................. TCCTGGGCCATCCCACGCAGCTGCGCGGCCGC 103215 29 100.0 32 ............................. GCGGAGTCGATGTACCGCCACGGCATACCCTT 103154 29 100.0 33 ............................. GGGCCCCACCTCTCGCCGAGGTGGGGCCGTTTC 103092 29 100.0 32 ............................. TGGTCGGACTGGAACTGCGACTGCAGCGTTCA 103031 29 100.0 32 ............................. ACCGGGTTCGGCGCCCCGGAGTCCGCCAACGC 102970 29 100.0 32 ............................. CCGCCACCCTCACCCGCGGCGGCGCGACCCTC 102909 29 100.0 32 ............................. ATCAGCGTGCCGGTGCCGGATGTGCCGGATGT 102848 29 100.0 32 ............................. ATCAGCGTGCCGGTGCCGGATGTGCCGGATGT 102787 29 100.0 32 ............................. CCACCGCCACCCCCAGGCAGATCTACTACATC 102726 29 100.0 32 ............................. TCCTTGAGCGCGTCACCCGCCTTGTCCAGGGC 102665 29 96.6 32 ............................G ACCTGAAAGCGGTGCTGTCCGACGACGACGTG 102604 29 100.0 32 ............................. GGGCAAGAACATCCGTACTCGACGCGGAGTGT 102543 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 102482 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.0 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : AATCCCCCACACCGCTGAACCAGAAACCACCACCGCTCACGACATACGCATCATCGCCCGCAACCGAGTCGCCTTCGGCAAGAAGAAGCACAACCGACAGGCCGGGACCGTCACCCTCCACACAGCTACCTATGAAGGCAGACTCGAAGTAACCGACCCCGAACGCCTCACCACAGCCCTGCTCAACGGAATCGGACCAGCCAAAGCCTACGGCTGCGGACTACTCACCCTGGCGCCGCTGCAAAGACAATGACTTCCCGATACCGGACGCACAGCCTCCACCAGTCCACACGAGCGACAAGCAAGATCATGAGCGTCAATCGTCGACCACCGCCACATCAAACGCGACGAGAACCCGATCACCGCGATCAACCCGATTCGCACAACCAGAACTGGTGGGATGCTGGCCGCCGGTCCCTCTACCGGCCTCCCGCGCCCACCCGCAGAGCAAAGTGAATGAAAAACGCGCCCCTCGCGAATATAACCGCAGGTCAGGAAGT # Right flank : TGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTCAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCGCCAACGAGGCATTGAGCCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCGATAGCCGCATACGTTTCAGCCCCAACGCGGAGCGGATATGGTGCGTCGCGGCTGCACTCGAGGCCGGCATGGTCGGCATCAACTCAGGCCTGATCCCCAACGAGACAGCGCCGTTCGGCGGCATCAAGCAATCCGGCCTCGGCCGGGGGGTCGATCAATGGACCATTCGCAGCACGACGGCAGGACCGACGTCCCGTCTCTCCAGCTGAGTTTGTGCTGCACCGATGTATACTCCGAGTGTCTCGAGTGAGGTTGTGCCGAGGCGGGATGAGCAAGGGGGGAGTGAACGTGCCAGATCCGTCGACTTCGCTGACAGTGACCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //