Array 1 7070-4856 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPW01000006.1 Treponema endosymbiont of Eucomonympha sp. strain D11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7069 36 100.0 30 .................................... TGTTTGGGAGCCGTCCTCGTTTGATAGTCC 7003 36 100.0 30 .................................... AAATTACGAAAAAGGAGTGTCTTCTCCTTC 6937 36 100.0 31 .................................... TCAAGGAAGCCGGCGCAAAACGAGCTGTTCT 6870 36 100.0 30 .................................... AGGTTACGCTCATAGACAGCGGCGCGTTTA 6804 36 100.0 30 .................................... ACGTAATACCTTATGTCGTACCTTGTAATG 6738 36 100.0 30 .................................... CCCCTTTTTGCCGTTGCCAATGATGCCCTT 6672 36 100.0 30 .................................... TTGTATGAATTGGATACTTTTATTCCATCA 6606 36 100.0 30 .................................... ATACATGTTTTCTTTGGTGCTGAGCGTATT 6540 36 100.0 30 .................................... ATGTTGTGTAAGTCCCCGTTCTATCTGGAG 6474 36 100.0 30 .................................... GACCGACAGCAACAGACGGATGGGTACGAC 6408 36 100.0 30 .................................... ATGTCACAGGTCAAAGACGCCAGTGCCGCT 6342 36 100.0 30 .................................... GGAAAATATCGCTTTATTATATAAATTGAT 6276 36 100.0 30 .................................... ACGCGTTAATCTTATGCAGAGGAGGAACGG 6210 36 100.0 30 .................................... ACTACCATGCCATTGTTTTCGGACTTGGCA 6144 36 100.0 30 .................................... TTAACCTGAGCCATCGAAGAACGATAGTTT 6078 36 100.0 30 .................................... TCGTTTCCACACGGTAGTGACACCCCTCCC 6012 36 100.0 30 .................................... GATATTTCTCAGACTAAGATGCAGATGGCT 5946 36 100.0 30 .................................... AAAAAAGCTGAAGGTCTCGTTTACGCAAAC 5880 36 100.0 30 .................................... TTGACCTGAGCCATCGAAGAACGATAGTTT 5814 36 100.0 30 .................................... TATTCTGAAAAGAAGTGTTTTCTTACGCTT 5748 36 100.0 30 .................................... GTACAGGCTCGTGCGATAGAACGAGAAGAA 5682 36 100.0 30 .................................... ACAGAGGCAGCTGATGCCGTCTGGGGCATT 5616 36 100.0 30 .................................... GTGTTAATCTCCCCACTGATATGGTCGAAA 5550 36 100.0 30 .................................... CCTCCCGTCCTCGTGGCTGGTACACCCCGG 5484 36 100.0 30 .................................... CAGTTCGTTCTGCATAACCCGCCGCGTGTA 5418 36 100.0 30 .................................... CCAAAAGCTGGACGAGGCGCGTGACCGTCT 5352 36 100.0 30 .................................... AGTTCGTGCCTTCAAGAAGCGGCGCCCCTA 5286 36 100.0 29 .................................... CTGTTTGCAGTCATTCTACCTCCGGGGTC 5221 36 100.0 30 .................................... ATCAAGACGCGCAGTTTAGCGTGCTCTTTA 5155 36 100.0 30 .................................... TAAAGTTCGTGAATGGACACTTCGGCTATC 5089 36 100.0 30 .................................... GTCGATTGGTATTCGTCTATGAGAAATAAT 5023 36 97.2 30 ........................C........... GATACTAAGGAACAGCATGATACGCGTTTC 4957 36 100.0 30 .................................... GTACAGGGCGCACGGCGAGTAAGAAAAAGA 4891 36 97.2 0 ......................A............. | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.8 30 ATTGTAACTGATTAATTCTTTTGGTCAACCTGCAAC # Left flank : TTCAGGGAATGCACTATATGTGTTCGGCGTATACAAAAGCGCTGAAAGAGAAAAAGAGCGATTTTGACATTCCTGTCTGGGAAGGCAAACATGAAACGGTATCCGCTTCTGAATAAGTATGAGCTTATGTGGATGATGGTTTTATTTGATTTGCCGGTCGTTGAAAAACAGGAACGAAAAGACGCTGTCGATTTCAGAAACTTTCTGCTTGACAACGGGTTTTCCATGGTGCAGTTTTCGATATATATAAAAGTGCTCTCCGGAACGGACGCCTGCCAAAAGTACTATGGGCTTATTGAGCGGCATTTGCCGGAGCAAGGGAAAGTCGACATTGTTACGATAACGGACAAACAATATGGCAACATTAAGAGTTATGCGGGGAAAAACAAAAACCGCAAAAAAAATCCTTCCCCGCAACTTCTGTTATTCTGAAAAACAGAGAGAAAAAATATGCCCGACCATTTCTATTTCTTTGCAGAAAAAGAAGTTCGGTCGGACAT # Right flank : GGGAATCTTCGTGCACATGTTCTGGACTCTTGCGCTCATGTTCGCAACTGTTGCGCTCATGTTCTGAATGATTGCGCACACGTTCGGGATTGTTGCGCCCGTGTTCTGAACCTTTGCGCTCATGTTCGCAACTGTTGCGCTCGTGTTCTGAATGGTTGCGCACGTGTTCTGAATGGTTGCGCTCATGTTCGGGACTGTTGCGCAAGCAAGCGCGACTTTTGAATAGACCTGTTCAACAGTTGCCGCAGCTTCGCCGGCGGAAAGGGCGCTTGCCGGGTTTGCTTCGCAAGCTCGCGACGGAGAGACAAAGCCTGTTTGCCGCGCATAAGCGAAAAGCGGCGGGGCAAAAGCGGCAACAAATGCGTTGCGCGGGCGCGGAGGTGTGCGCTGATTCACCGGCGGGCACAAAAAAACAGGGTTGTTGCCCTGCCTCTGCCGTAAATGCCGGATTCCTTCAAGGAACCCGGACCTTGCCCATAAGAGGAACGCTTACGCCGCTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAACTGATTAATTCTTTTGGTCAACCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 500-1548 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPW01000089.1 Treponema endosymbiont of Eucomonympha sp. strain D11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 500 36 100.0 28 .................................... CAACAAATCGTTTTCGATAATAAGTAAT 564 36 100.0 26 .................................... CCAATCAAGCACATCGCGCTGTAATT 626 36 100.0 27 .................................... CAATCGCCCGCGAAAATAGCATCTATG 689 36 100.0 28 .................................... TACTGTATCATATATCTGCGAAAACATG 753 36 100.0 28 .................................... TTGTAATAGTCGTCCGCGTTCGTGTACG 817 36 100.0 27 .................................... CAGTGATTATATGTCGCTAAAGAAAGA 880 36 100.0 26 .................................... AAGACAGATTATACGGGATGCTACTG 942 36 100.0 25 .................................... TTCCAGCTGCACCAAGTCCGACAAT 1003 36 100.0 28 .................................... GTGAATAACCATTTGCTATGTTTTGCCA 1067 36 100.0 26 .................................... ATGGACTAGTCGATTTATTACACTGT 1129 36 100.0 27 .................................... TATGACTGATGCTTTTACTCCATGGCC 1192 36 100.0 25 .................................... CATGGGAATCCAAGTGATATCTTTT 1253 36 100.0 27 .................................... GATCAGGCTCAAGTTGCCATGGAACAT 1316 36 100.0 35 .................................... AGCTCTTATCCAAACGCCGCGCTAGCCGGTCTAGA 1387 36 100.0 27 .................................... GAGGAAAAGGCTTACCACAATCAGCAC 1450 36 100.0 27 .................................... TTATATCCTCTAACGTTGATTTTGGAT 1513 36 97.2 0 ...................................C | ========== ====== ====== ====== ==================================== =================================== ================== 17 36 99.8 27 GTCTAGACGTTACTATTAATTTCTACTGTTGTAGAT # Left flank : TTTTGTGCGGCTAATGTCCTGACTGCCGCCTTGTGCCCCGCATGCGTCCGCGTGTGCCTTGATATACGTCGAATCTATCATAAAGATATCCCCGGCAGGCTCGCCTATTGCGGCGTCCGCCAGCATTTTCCCTATTTCCCTGTCCCGCCAGCGGCAAAACCGCTTGTGTATGCTGTTCCAGTTTCCGAATTCGGGCGGTATATCCCTCCGCGGAGCGCCCGTGCGCGTCTGCCACGCTACCGCGTTGATAACAAACGGCTGTCTTTCGCCGCTCCCCTGCGTTTCCCTGCCTGTCCGGGCAGCAGTTCTTTTATCCGTTCCCACGCCTCGTCGCTTATATCGTGCCGGGCGAATGCAAACCCCCTGTCTTACTGTTTTTTGCGCCGCGCCGAACGCTGCGCTCTTGCGCAGAATGCGCGTTATGGGTACAATAGGCGGCGGATAGCGTCTGATTTCGCGGCGCCGCAGGCGCAAAACGCCGTCAAAAACGGGTGTTAGAG # Right flank : CGCAAGGCATGGAGCAGATGTATCAGATATTATATGTCGTGTTAGGAAGAATACTATTGCCGCGCATACCTGCGTATGCGTCACGGAACTTCGGGTATATGCCGCATAATTCCGGGTATGAGCCTCTCCGACGCGGGTATGAGGCGCGGAACTCCGGGAATGCGTCGCGGAACTCCGGGTATATGCCGCATAATTCCGGGTATGAGCCTCTCCGACGCGGGTATGAGGCGCGGAACTCCGGGAATGCGTCACGGAACTCCGGGTATATGCGGCATAATTCCGGGTATGCGTCTCTCCGACGCGGGTATGAGGCGCGGAACTCCGGGAATGCGTCACGGAACTCCGGGTATATGCGGCATAATTCCGGGTATGCGTCTCTCCGACACGGGTATGAGGCAGGGCGAGTCGGGTCTGCAAAGACGCCGCGGGCGAGGCTATGCCCCGTCGGAAAGACGAACGGCACGTTCAGCGCGGCACAAATTCTGGCGCATGACGAAAAG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGACGTTACTATTAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //