Array 1 46742-48052 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZWS01000022.1 Citrobacter sp. wls826 contig50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46742 29 100.0 32 ............................. GGCGTTTAACAGCGCCTCTAACTGGCGTTGAT 46803 29 100.0 32 ............................. GTAACTAACATCAAAACGTGCTGAGAGATTGA 46864 29 100.0 32 ............................. CCCCTCTATTAAAACTTGGTCGCGGGGAATAT 46925 29 100.0 32 ............................. TGCTCGCTACGCTGCGCGGCCTCCGTCGCGTT 46986 29 100.0 32 ............................. AAAATATTCTCTTTTATTTTGTATTTTGGCAC 47047 29 100.0 32 ............................. AACAGGCGTTTTCAGTGGGGCGCGGGTGTGCG 47108 29 100.0 32 ............................. GGCTGGGACATCATGTTCATAATTCAGGATGT 47169 29 100.0 32 ............................. AGCACTTTACACCCCAGGCGGGGTGGGTTGGG 47230 29 100.0 32 ............................. CAATACATAGAAAAGCACTACGGCGGCAATCA 47291 29 96.6 32 ................G............ ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 47352 29 100.0 32 ............................. CCGTTCGCGTTGGCGTACTGAATTAATACAGC 47413 29 100.0 32 ............................. ATCAGAACCGGCCAACACCGTCAATTGTGGGT 47474 29 100.0 32 ............................. GGCATTTTTGTACCAAAAAATAAACTATATAG 47535 29 100.0 33 ............................. ATATATTTCAATAATAGGCGCTAAATCTTTCGC 47597 29 100.0 32 ............................. GGGCATGAAAAAAGGTGGTTGGCGGTCGTTGG 47658 29 100.0 32 ............................. CTACGGAGCGAGCTTACGCATTGCAGGCAATG 47719 29 100.0 32 ............................. CATTCAGTTGGAGGACCATGTGCCTACAACTA 47780 29 100.0 32 ............................. TTGATCTCCAGAATTATACCCTCCAACAAAAA 47841 29 100.0 32 ............................. GGCAATATTCTGCTCACCAGCTTTGATGGCCG 47902 29 100.0 32 ............................. ATCACGAAGACGAGCAACACAAGCGCGCGGCT 47963 29 100.0 32 ............................. CATTTTTCGAATTGCTGCCGCCAGTTCATCAG 48024 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAAGAAGTGCTGGCTGCCGGGGAGATTGAAATCCCTAAACCTTTTGCAGATGCCCAGCCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGTCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATATTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCGATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCCTGGCAGACGAAGGGAATGTTGTTATGGCTTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTCGATGGATTAAGGTTAGTGTCATTCCATCCTTCGTAAAATCAATGGGTTATAGTTCTTTAATAATGTGGAAAATTTGGTGGAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : CCGTTCCCATACGGGCTAGGCGGGGCGCTAGGGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173914-173458 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZWS01000063.1 Citrobacter sp. wls826 contig55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173913 29 100.0 32 ............................. GAGCTGGGAAATGGCAGACGCTCCAATCAGCT 173852 29 100.0 32 ............................. AACGGTTTGCCAGGTCCCACCATCAGTCTGTA 173791 29 100.0 32 ............................. GAATGATCAACCTCTTCGCGACGCTTACCCAG 173730 29 100.0 32 ............................. TGATCGATGTAACCAGGTACGGAATAGGTAGG 173669 29 100.0 32 ............................. GTAAAGCAGGGGGAGCAACGTTAGTATTCGGC 173608 29 100.0 32 ............................. GTCGCCAGTGCGGTCGCCTCTAGTGCCGCGCC 173547 29 100.0 32 ............................. GAACATCCTGAAGTACACATCAAAAACGAACT 173486 29 89.7 0 ............T............T..A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCGGGGCGCTAG # Right flank : CTTTGAAAGCAGAAATATTATGGGGCTGGATGGGTTACGAGGATTTACCCGCCTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTACCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCATCGTCGAAGACCTCTGCGTCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGTGCCCGGTCGCGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //