Array 1 1020312-1021926 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134209.1 Escherichia coli strain NCTC11476 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1020312 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 1020373 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 1020434 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 1020495 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 1020556 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 1020617 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 1020678 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 1020739 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 1020800 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 1020861 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 1020922 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 1020983 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 1021044 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1021105 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1021166 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1021227 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1021288 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1021349 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1021410 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1021471 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1021532 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1021593 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1021654 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1021715 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1021776 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1021837 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1021898 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1037428-1038126 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134209.1 Escherichia coli strain NCTC11476 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1037428 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 1037489 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 1037550 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 1037611 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 1037672 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 1037733 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 1037794 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 1037854 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 1037915 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 1037976 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 1038037 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 1038098 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGAGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //