Array 1 311856-317825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSPR010000004.1 Advenella alkanexedens strain LAM0050 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 311856 28 100.0 32 ............................ TTGACGGTAGGCGTAATGCGGTGGGCTTCGTC 311916 28 100.0 32 ............................ GTAACGATATTCAGGCAAGGCATGGAAATAAA 311976 28 100.0 32 ............................ ATTTGAGCCTGAAAGATCAGGGTATTGACCGA 312036 28 100.0 32 ............................ AACAGTACCAATAATTGCTGTTGTTCCGATGG 312096 28 100.0 32 ............................ CGCCACTGCTTCCCTGACGACAGAGGGCGACT 312156 28 100.0 32 ............................ AACAGTACCAATAATTGCTGTTGTTCCGATGG 312216 28 100.0 32 ............................ AAGGTTCCCGCCTTGGGTTTTTTCTTTCCTGC 312276 28 100.0 32 ............................ TGGACGGTTTACCGGATTTTTTTATTAAGAAT 312336 28 100.0 32 ............................ TCGACAGGCAACAAGCCTTGAAACGGGACTTG 312396 28 100.0 32 ............................ ACATCAGGCATCTTACCGTGTGAGTCCACATC 312456 28 100.0 33 ............................ GTCTTGCCCGGCGTAAGGTTCAAGAGGGCCAGC 312517 28 100.0 32 ............................ ATAGATGTAACGTTTCAAAAAATTACATTTTT 312577 28 100.0 32 ............................ TACGGCCATTGAAAACCCTTGACGGCTGCGCT 312637 28 100.0 32 ............................ TTTCTGCTATTTGCTTGACTGGTATTTCTGGA 312697 28 100.0 33 ............................ CTCTTCGCATGGCGAAATTCTGATAACCTTCAT 312758 28 100.0 32 ............................ TGTTTTAGTGACTGTGCCGCCCATAGTTGAAA 312818 28 100.0 32 ............................ GCTTACGCAATATGCTAAGCGGTTTTTTTTGC 312878 28 100.0 32 ............................ ATTTTCATCACAGCCTCAGCCTTGGCCGGATC 312938 28 100.0 32 ............................ ACCCGCTTTGCCTCAATCTCCGCGTCCACCTT 312998 28 100.0 32 ............................ AGTCACAGGCTTCTCAACGACAACAACAGGCC 313058 28 100.0 32 ............................ TGTTGCATTGCATATGTCGGTCGTTCCGGTGT 313118 28 100.0 32 ............................ TTCCCGCCGCTCGGCCTCGCTACGCTCAAGCT 313178 28 100.0 32 ............................ TTCTGGCTTGATGGGCTTAGGTCAAAAAAGAT 313238 28 100.0 32 ............................ TGGTCAAAATCAAGATATTTTAAAGGATTATA 313298 28 100.0 32 ............................ TCTAAGGGGCGTTGCCCCGCCAGCGCTTCGCT 313358 28 100.0 33 ............................ CACGTAAGATCACTACCGGCATAAAAAAAAGGC 313419 28 100.0 32 ............................ CGCGCCCTTGACCTGCTGCTTTATCGGCGATG 313479 28 100.0 32 ............................ AATCTCTTGAGCGATAAAATCAAGGACTAATT 313539 28 100.0 32 ............................ AAAAATAGGATTGCCCTATGGTTCCATCCCTA 313599 28 100.0 32 ............................ TAGCTTTAATTTCTCAAAAATGCAGGTAAAGC 313659 28 100.0 32 ............................ AGTTGGGTTTATGCTTGCTGCTGAAGCGGTTA 313719 28 100.0 32 ............................ TGAACAAAACGAACGGATTACAAAGTCTAATT 313779 28 100.0 32 ............................ AACAACTTGATTACCAGATCTAAAAATAAATT 313839 28 100.0 32 ............................ CTAATTCGTCAGTAGAACCGCTCATTAATGGA 313899 28 100.0 32 ............................ TGCAGGACTTGCCGGAGGGGCTGGAGTTTATG 313959 28 100.0 32 ............................ CCTTTTTTCTATGGGGTTTGCGTTATATATTC 314019 28 100.0 32 ............................ TGCACATCAAGCATCGTGAAAGTAATCAGTGA 314079 28 100.0 32 ............................ TGATGGTGAATTACGGGATTTGGTAATTGAAT 314139 28 100.0 32 ............................ AGCCGAATCGGTAGGCATTGGCCGGAATGTTG 314199 28 100.0 32 ............................ GACCCGAACGACCCAGCCAAACGGCAGACCCT 314259 28 100.0 32 ............................ AATCTTCACCGCTTACCGCTCCTGATAACGCC 314319 28 100.0 32 ............................ CGTGATCTTGCGGAACCGGATATCGTACTGCC 314379 28 100.0 32 ............................ TCGTACCTTGAGGCCTGAGCGGTAGCGATGGG 314439 28 100.0 32 ............................ ACGCAGGCGCATGGCTTCAACGCGTCCAACGC 314499 28 100.0 32 ............................ TTAGCCATTAGACGGCTCAAGACGGCCGTCAA 314559 28 100.0 32 ............................ TGATCCTGTCCGACCAACAACAGATACCCGCT 314619 28 100.0 32 ............................ GCGTGGTTTTCTGGCGGCTCGCTATACTCAAA 314679 28 100.0 32 ............................ TGATCACCCGGTTCATATTCGGCTATGTCTTG 314739 28 100.0 32 ............................ ATTACCTTGCTCCGGCCATGGCCTTGGCAATC 314799 28 100.0 32 ............................ GGTCAGATCCGTTTATTGAGTTCGATCAGTTG 314859 28 100.0 32 ............................ TGACGCTCGGCAATCTATTTCAAAATCGTGAA 314919 28 100.0 32 ............................ AGATACAAATCCAGAGTTAAAGCATAATGTTT 314979 28 100.0 32 ............................ ATCCTATTCTTCAAATATGCTTTGTTGTGCAA 315039 28 100.0 32 ............................ ACCCGTGGCAGGTCGGCAGAATGGTAATAGGG 315099 28 100.0 32 ............................ TCTTTCGGGTTGCTGAAGTGCCAATTAAAATC 315159 28 100.0 32 ............................ AGCTGGATAACCTTAATCCTGACACCTTCGGA 315219 28 100.0 32 ............................ CTCGCCAGCGAGGGGAGCGAGTCGCCCTCTGT 315279 28 100.0 32 ............................ TTCTTTAATTACAGCCATTGCAAGTGGTGCCG 315339 28 100.0 32 ............................ CGGAAGCTAATTTAAAGGCATTGGCCGGTATC 315399 28 100.0 32 ............................ TGTTGGCTCAATCGCTGGACACCCTTTACACC 315459 28 100.0 32 ............................ TGCGAAGCCGTTTTGTGCTTGTCCAGTGGTAC 315519 28 100.0 32 ............................ AGCCGGGTGTCCCCAGTTAGGAGGTCTTGCGC 315579 28 100.0 32 ............................ ATGTACCTATTGTTCGCTGTAAAGCTATTGTT 315639 28 100.0 32 ............................ AGGTATGCCGTCCTTAATTACGGCTATTGCAC 315699 28 100.0 32 ............................ AAGTTGTTTCCGATAGCTCACATTCTGTAATC 315759 28 100.0 32 ............................ TTGGTAAATGGGAGGGGCGCGGACAGTACGTT 315819 28 100.0 32 ............................ ATGATTGCTCCTTAAATTGCTCGAAAGCGAGG 315879 28 100.0 32 ............................ GCTTGCCGAATGAACTTTCAACAGAAACACTG 315939 28 100.0 32 ............................ AGAGAAACAATCGAAAAGCGCCGCGCACTGGC 315999 28 100.0 32 ............................ TAACCAATCTGGCCCGCTCATGTAGCGGGTCT 316059 28 100.0 32 ............................ GGTGGCAAGGACTCGGCCTGTGCCAGCTTGAT 316119 28 100.0 32 ............................ AAAAGCAGAGCCAGTTATAAAACGTGATCCAG 316179 28 100.0 32 ............................ AAGGCTCGATTTAGTGCCTTCCTGGGCTTTTT 316239 28 100.0 32 ............................ TCAAGCTGATCCAGCCATTCATTGGCGCAAGC 316299 28 100.0 32 ............................ CAAAAGCAAAAAGCAAAAGCGAGGTTCTTCAT 316359 28 100.0 32 ............................ GGAATTTTGGAAAATGTATTTGGAGAGGTTTT 316419 28 100.0 32 ............................ AAAAACGGTTTGATTATTTGATCGAATCTAAT 316479 28 100.0 32 ............................ AAGCTGCTGGATGATCTGGTGATGGCGTTGGG 316539 28 100.0 32 ............................ TTATTTGCATCCAGCCCCGCATTTTGACGGTA 316599 28 100.0 32 ............................ ATGGTTCGTCAAATGACCGAAGCAATCATCAC 316659 28 100.0 32 ............................ ATATTGTTTTAACCTTTAACCTTTTGATTTAC 316719 28 100.0 32 ............................ ATATGGATCTGTATTTTCTATTTCATTAAATT 316779 28 100.0 32 ............................ GTTCTCGCCGTCCAGGGCTGCGCACTGCGTGC 316839 28 100.0 32 ............................ AGCTCAATTTCTAACTGATTTTTTTGCTCGGC 316899 28 100.0 32 ............................ TTTTAAATCTGTCCTCATGCTGCGCACCAAGT 316959 28 100.0 32 ............................ ACTTCAGCCAAGCGACCAAAAAAAGATACGCG 317019 28 100.0 32 ............................ TCAACACAGATGGTGGCGAAGGTCTGGCAACG 317079 28 100.0 32 ............................ GCACAAGTAGGCGTGGATGTTGTTGATATGGT 317139 28 100.0 32 ............................ GCGCCGGCAAAAGCCCCGATTAGCGCATCACC 317199 28 100.0 32 ............................ AATCGACTGTGTTAAGAATAACCTGCACAGCT 317259 28 100.0 32 ............................ AACTGAAAAATAGGGGGCGATCATTTGCAGGG 317319 28 100.0 31 ............................ CAAGACAATATCTTTTGCCAGGAGTTTACGA 317378 28 100.0 32 ............................ ATAATGCCCGTATTTTGTCACAATCCATATCT 317438 28 100.0 32 ............................ AATGCCCTTCATCATCGTACGGTTCCGCATTA 317498 28 100.0 32 ............................ CAGAGTGAGGCTTTATGACGATACCTGGGGTG 317558 28 100.0 32 ............................ TGCGTGTGCCGATATAGTACGTGCCTGCTGCA 317618 28 100.0 32 ............................ AGCAACCCCACGCAGGGGGCGCCCCCCAAAGG 317678 28 100.0 32 ............................ CCGGCTTATCTGCAACAGCTGCCCTAACAACG 317738 28 100.0 32 ............................ GACTGGATTTTAATGATGTTCTGTTAGTTTAT 317798 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 100 28 100.0 32 GTTCACTGCTGCATAAGCAGCTTAGAAA # Left flank : TTAATCAAGAAGCACTGCTACTCAATAGCATGAAAGACTACGCCTTAATCGGCGCTGTTATTCCCATTCCAGAAACAGTCAATAGCTATGCTTATTTTAGCCGTCTCCATCACAAAGGAGCCAGCCATATCAGGAGAAGCCAAAAGCGATTAACTGAACGAGGGGAGTGGTCTGATGAGATTGCAGAAAATATGCTTGCAAAATATATGAAGCAAAAAAATTATCCTCATGTTCATTTAAAAAGCAGTACTACTGGCCAAAACTGGATACTCCAGATAAAACGGCAGCAGACTAATCTCCCTAGCAATAAGGGGATGTTCAACTCCTTTGGATTAAGTACACAACTTACTGTACCTCTTTTTTAAATTTTGACCCTTTTTAAAGCCAATAATAAATACAATATAAAATCAATGAGTTAGACATCGGCTTTAAAAAAGGGGAAAAACCATAATTATTCTTTAACAACTTGATAAATCAACAATATTCTTTTAGAATTTCTA # Right flank : TGTTAAGGCCGAGTGAGCGCGCCGAGCCGTTCGAGCAAGACACGTCCAGCAGGCGCATCATGGGCCTGTCCGGGAGAAAGTGAAAACGCTACGGCAGTTCGATCATCCGCGGCAACCATATGAATCTTGGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCTGCATAAGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //