Array 1 68182-69111 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNC01000013.1 Escherichia coli strain BX1S31 NODE_13_length_137934_cov_116.852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68182 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 68242 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 68302 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 68362 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 68422 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 68482 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 68542 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 68602 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 68662 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 68722 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 68782 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 68842 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 68902 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 68962 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 69022 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 69082 28 85.7 0 ....................A...C.CT | T,C [69102,69106] ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 78173-79461 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNC01000013.1 Escherichia coli strain BX1S31 NODE_13_length_137934_cov_116.852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78173 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 78233 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 78293 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 78353 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 78413 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 78473 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 78533 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 78593 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 78653 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 78713 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 78773 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 78833 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 78893 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 78954 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 79014 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 79074 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 79134 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 79194 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 79254 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 79314 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 79374 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 79434 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40251-39429 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNC01000014.1 Escherichia coli strain BX1S31 NODE_14_length_112551_cov_124.659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40250 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 40189 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 40128 29 100.0 32 ............................. ACGCATTCGAACTGGGCGACATAGAGCCAGGC 40067 29 100.0 32 ............................. GGCGCTGCAAAATGGGGTGGAAGAGCGGCGCT 40006 29 100.0 32 ............................. CCGCCAGCATATTGCGCTGCTCGATTGGGGGT 39945 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 39884 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 39823 29 100.0 32 ............................. ACGGACAAAATATATATTGATTTGCGAATTAT 39762 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 39701 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 39640 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 39579 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 39518 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 39457 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67382-65950 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRNC01000014.1 Escherichia coli strain BX1S31 NODE_14_length_112551_cov_124.659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67381 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 67320 29 100.0 32 ............................. CATAATGAAATTGGCCTCAAATGAGGCCAATT 67259 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 67198 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 67137 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 67076 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 67015 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 66954 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 66893 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 66832 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 66771 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 66710 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 66649 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 66588 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 66527 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 66466 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 66405 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 66344 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 66283 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 66222 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 66161 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 66100 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 66039 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65978 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //