Array 1 18434-19789 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLSO01000039.1 Streptococcus iniae strain QMA0071 NODE_2_length_112269_cov_64.3162_ID_1453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18434 36 100.0 30 .................................... AAGCGGAACAGATGACAATATATGATTTTT 18500 36 100.0 30 .................................... GCTGAAAAGACTGCTGTACTCGTTGGAATA 18566 36 100.0 30 .................................... TAGATCCCCGCATTTTTGACGAAAAAGCTC 18632 36 100.0 30 .................................... GGTCAGATACGCTCAAGGTCAAACAATTGT 18698 36 100.0 30 .................................... GCACTAGCAACAGACCAAGACTCGCACGGA 18764 36 100.0 30 .................................... TGCAACAAATAGCCTTATTATTGCTTTTAA 18830 36 100.0 30 .................................... TCCTTTTTGAGTAAAAGCTATTGTCTCATT 18896 36 100.0 30 .................................... TATACGACTATAAACAGTTGCCAGCTTCAT 18962 36 100.0 30 .................................... TATGGAAAATGTTGACTTCCACGGTAAATC 19028 36 100.0 30 .................................... TAGATCCCCGCATTTTTGACGAAAAAGCTC 19094 36 100.0 30 .................................... CGAAAGGTACTATAACCGATGAAGATATTA 19160 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 19226 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 19292 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 19358 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 19424 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 19490 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 19556 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 19622 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 19688 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 19754 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 98.7 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //