Array 1 298985-300605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUN010000002.1 Listeria seeligeri strain FSL L7-1054 NODE_2_length_306056_cov_54.950111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 298985 36 100.0 30 .................................... TAGTAACAGGGGAAGTGCTTTCAGCTAGAA 299051 36 100.0 30 .................................... TCTTTTGGATAATCCTCTAATTTGGCAATA 299117 36 100.0 31 .................................... CATTCTTCCGCTTTGTCGCTAGTGTAGGTGA 299184 36 100.0 30 .................................... TTCGCTTCCGGCACGGCCACATAAATGTAA 299250 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 299316 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 299382 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 299448 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 299514 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 299580 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 299646 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 299712 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 299778 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 299844 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 299910 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 299976 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 300042 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 300108 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 300174 36 100.0 30 .................................... TACGCAAAGACCAGATGCTAGCTTTATGCC 300240 36 100.0 30 .................................... CGTTTGCGGATTGCCCTCGTTAACGATTCG 300306 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 300372 36 100.0 30 .................................... AATTTAGCAAACTTTTTGGCTTTGACCATT 300438 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 300504 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 300570 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGGCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 183878-182096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUN010000004.1 Listeria seeligeri strain FSL L7-1054 NODE_4_length_238488_cov_48.685715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 183877 29 96.6 36 .......C..................... CCAGTTATGGACCGCGACGCTGTTGCAAATAAAATG 183812 29 100.0 36 ............................. ACGCCAATCTAGTAACAGGAGAAGTGCTTTCAGCTA 183747 29 100.0 37 ............................. GAAGATACCGTCCTAGACCCGGCATGTGGGTCAGGAG 183681 29 100.0 37 ............................. ATGGAATACAAAAGAAAAACCTACAGAATACAATTGT 183615 29 100.0 34 ............................. ACAGATTTTAAATATGATAACAGCAAAAAACACA 183552 29 100.0 34 ............................. TTAGTATACAAATTCAAAAGCTCAAAGTCTAATT 183489 29 100.0 36 ............................. AAAATAAAAGTCAAAGAAGCGACTAAAAAAGGCTTT 183424 29 100.0 37 ............................. ACAAAAGGCTACGCAGATTGGGACCGCCCTATTTGGT 183358 29 100.0 37 ............................. ATCTTTCGAGGTAATGAATTGTTAGCACGTGGCGTGC 183292 29 100.0 36 ............................. ACAATAACAATTTGATTTTCATAATCATGTTTTTCG 183227 29 100.0 37 ............................. CTATTTGCCCTTTATAGTTCAAGTATCAAAGATAAGT 183161 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 183098 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 183034 29 100.0 34 ............................. TTTGATAAATTTGACGTTCTCCCATCACTTTTCC 182971 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 182906 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 182843 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 182777 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 182711 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 182646 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 182580 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 182516 29 100.0 38 ............................. TCGCTTATATGCGAGTTGACAGCCGCGATAATATACTC 182449 29 100.0 35 ............................. ATATAACTAACATTTTCAGCGACGGACGCGTCCAT 182385 29 100.0 37 ............................. CTGGTTGGAAAATGAAAAAAGTGGCTAATGGTTATGT 182319 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 182254 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 182189 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 182124 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCAGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGAGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 190708-190101 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUN010000004.1 Listeria seeligeri strain FSL L7-1054 NODE_4_length_238488_cov_48.685715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 190707 29 100.0 36 ............................. ACGATCCAAGAAATTTGAATGCTAACTGGGTACCTG 190642 29 100.0 36 ............................. AGTGAAGGACATGCCCACATGGATGCAAAAAGGATG 190577 29 100.0 36 ............................. TGATACACAGCCTACTAATGCAGCTATTATCAAAAC 190512 29 100.0 34 ............................. TAATTTGTTCGGCTTTTTCAGCTCGTTGTTGTGC 190449 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 190386 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 190322 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 190258 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 190194 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 190129 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 99.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //