Array 1 897-441 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260390.1 Ruminococcus callidus ATCC 27760 Scaffold2158, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 896 28 100.0 33 ............................ CGCAGAGTGTACAAAATATCGTTGAACGATTCG 835 28 100.0 33 ............................ TATCAACACGGGAAAATTACAGCCGTTTGATCC 774 28 100.0 33 ............................ TACAACACTGGAAAATTGTAGTATCTCTGGCAC 713 28 100.0 34 ............................ CCATGCAATCACCTCCAATTATGAACAAAATATG 651 28 100.0 33 ............................ TCGAAAAAGCGGAGGTGTGCATCATGAAAATCA 590 28 100.0 33 ............................ CGCCATGAAGGTCTTTTTGGTCATGAACCACTT 529 28 100.0 33 ............................ TCATGACATGCCAAACGATCAAGCATTTTGTCA 468 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 33 CTTTTCCCCGCATAGGCGGGGGTGATCC # Left flank : AAA # Right flank : CTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACTTTTCCCCGCATAGGCGGGGGTGATCCCGATCCGCAGATGCTCCGGATCAAAGAAAAAGACTTTTCCCCGCATAGGCGGGGGTGATCCTTCCACTGCAAACTACCGCCGAACAAAGGTGCACTTTTCCCCGCATAGGCGGGGGTGATCCTGTTACATATCCGTCATTACTAATTTTTACCGGCTTTTCCCCGCATAGGCGGGGGTGATCCTAAATTTCTGGTCTGTCCCTTTCGGTTCAGCGTCTTTTCCCCGCATAGGCGGGGGTGATCCCGACTTGATCCTTGACATTGCCGAACTTGTGCACTTTTCCCCGCATAGGCGGGGGTGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : CTTTTCCCCGCATAGGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72-710 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260391.1 Ruminococcus callidus ATCC 27760 Scaffold2168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 72 28 100.0 33 ............................ GGTACTGGACATTCTCCCGGACCGGCACAAGAA 133 28 100.0 33 ............................ CGTTTTGCAACGTCGCTTGAAATCACGGTTTGC 194 28 100.0 33 ............................ TAGCCATTGACGCATGCTAAAATATCGGGTACA 255 28 100.0 33 ............................ TGAATGTTAAAAAATTGCGTGATCGGTATCCAG 316 28 100.0 33 ............................ TGCCCCCGGTGCGATACTCTCACTCATGCCCCA 377 28 100.0 33 ............................ CATTTTTAATGCTATCGTCGAGGGCATCAAAAA 438 28 100.0 33 ............................ TAAATACTGGTGTTGGCATAATCCAAAGAAATT 499 28 100.0 33 ............................ CTGGGCGGTCTTGTCCAGACCGTCCCAGTCAGG 560 28 100.0 33 ............................ CGCCGGAAGCCTATGTGCAGATGCAGTGCGACT 621 28 100.0 34 ............................ TGGTACGCGAAGGGTGCCGTGCTGCATCAGCCGA 683 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 11 28 100.0 33 CTTTTCCCCGCATAGGCGGGGGTGATCC # Left flank : GCTCGCTTGGCTAGATGTTAAGTTAATGACATTGATCCCGCTGCGGGGTAAAAGTCTTGTCCGCCACCGAAC # Right flank : TTAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20981-22412 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260433.1 Ruminococcus callidus ATCC 27760 Scaffold484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 20981 28 100.0 33 ............................ TAGTGCCCGTAAAAAACCAGTCCCATGCGTTGC 21042 28 100.0 33 ............................ TGGGGCTTTGCCCGCATAAGGTGAAAGTTACCA 21103 28 100.0 33 ............................ TACCAGTGAACACGCTTTTGATGTTTTCCCAAA 21164 28 100.0 33 ............................ CAGAATACGACACGACCACCTTTGGAATACAAA 21225 28 100.0 33 ............................ TGGCTATGTGGTTTCCAACGACATTGAGTTTAC 21286 28 100.0 33 ............................ TCAAAGCAAAATGGAACGCGGAGCACTACGATC 21347 28 100.0 33 ............................ TGCCATATACGCCAGATGCCGTCAGACGCACAC 21408 28 100.0 33 ............................ TGATAAAATCATCTTGACAAATGATAATGATGA 21469 28 100.0 33 ............................ CAGCCGTGCCGGCTGGCGGCAATCCAGACAGGC 21530 28 100.0 33 ............................ CATCAGCGAGAAAGCCGCAAGCATCAGCGTAAA 21591 28 100.0 33 ............................ TTGGTTCGTTTCTATGCGGCGGCGTGGCTTTAA 21652 28 100.0 33 ............................ TATACGGCTTTGCAATTTTCCCCGGAATGACTT 21713 28 100.0 33 ............................ TGTAGCACAAATTTTGCTTGTTCAATTTGTGCA 21774 28 100.0 33 ............................ TGCTCCGCGAAAAGGCAGGCATGACACAGCAAG 21835 28 100.0 33 ............................ CTTGCTGGCAGCAGTGACAAGCCTGTCTTTGAG 21896 28 100.0 33 ............................ TGACCTGCAATGCTGCACCGCTCAGTGGCTTGC 21957 28 100.0 34 ............................ CTGGTGCCGCTGGCAAAGACGGAGCCGCCGGCAA 22019 28 100.0 33 ............................ CTTCGATTCTTTCTTCATATGACATAAACAAAC 22080 28 100.0 33 ............................ TTTGAGCGATCATGTTTTCCACCGTCAATCGTA 22141 28 100.0 33 ............................ TCAATATCATCGAGCCAAAGACAAGCACAGTAA 22202 28 100.0 33 ............................ TAAGATGGACGTTATGGAATCCGCTACTGCTAT 22263 28 100.0 33 ............................ TATGCAAGCTCATAAATAACATTCCTAGCACGA 22324 28 100.0 33 ............................ TTGATAATCTCTAAGTATTCTGATGGGGTACAC 22385 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 24 28 100.0 33 CTTTTCCCCGCATAGGCGGGGGTGATCC # Left flank : GAAAAAGATGAAATTCTGGAACTTGGAGCAATACGGGTTCAGGACGGAAAGTGTGTGGACGAATATCAGCAGCTGATACTGGTTCAGAATGAAATTCCTGAAACGATCACTGCATTGACGGGAATTGAGAATGCATCTGTCAAAGCAAATGGGATTCCTATTCAAGATGCCTTAGCTGCATTTTATGATTTTATAGGAAGCAGCATGGTCTTGGGGTATTGTATTGATTTTGATAAAAAATTTCTCGAAACTGAAAGTCAAAGAAATGGCATGGATTTTCCAGAAATGGATACTTATGATGTAATGCAGGCTGCAAAAAGCAAAATAAAGGGGTTGAGAAGTTATAAACTCGAAACAATAGCAAACGTATTGGGAATTCCGGCAAAACAGGAGCATCGTGCACTGGCAGACTGTCAGCTTTTGTATCAGGTGTATTGCAAACTAAATGAAAATGAAGCAGGCTGATGGAAAAAGTAACGCTGTTTTGGGATCTTTTTAGT # Right flank : CTAAAATGAAAAAGTATGATCTGGCAAGCATTATCTTTTCCCCGCATAGGCGGGGGTGATCCCTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTTTTCCCCGCATAGGCGGGGGTGATCCTAAAAAGGCAAGGCTGCCGCGGGGCGGGCTGATCTTTTCCCCGCATAGGCGGGGGTGATCCAGAGAGGAAACACAAAATAGCTTCTACCATGGACTTTTCCCCGCATAGGCGGGGGTGATCCTCAGAGCACATTTGTATACATGTACAAAACAAGCTTTTCCCCGCATAGGCGGGGGTGATCCCTGTGCCTATGAGCAAGGTCTTTTCTGATGCCACTTTTCCCCGCATAGGCGGGGGTGATCCTGCTGCGGCGATCTTTTGGGTTTGCTCGTAGATCTTTTCCCCGCATAGGCGGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : CTTTTCCCCGCATAGGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22646-23529 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260433.1 Ruminococcus callidus ATCC 27760 Scaffold484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 22646 28 100.0 33 ............................ AGAGAGGAAACACAAAATAGCTTCTACCATGGA 22707 28 100.0 33 ............................ TCAGAGCACATTTGTATACATGTACAAAACAAG 22768 28 100.0 32 ............................ TGTGCCTATGAGCAAGGTCTTTTCTGATGCCA C [22794] 22829 28 100.0 33 ............................ TGCTGCGGCGATCTTTTGGGTTTGCTCGTAGAT 22890 28 100.0 33 ............................ TCGTAGACCTAGCACGGTAAACGTTCTTAGGCA 22951 28 100.0 33 ............................ TGCTTGTGCCTTTACGCTGATTATAGTTACGTA 23012 28 100.0 33 ............................ CAAGCGGCACCCGGAAAAGGGCGGGCGGTCTTT 23073 28 100.0 33 ............................ TGCACGCAAAGACCGTTACGCCGTCCGCATCTC 23134 28 100.0 34 ............................ TACCAACAGATACAACAAGTACAGCGGTCATAAC 23196 28 100.0 33 ............................ TAAAGCCGTCTTTCAACACAAAACGAGTGCGGT 23257 28 100.0 34 ............................ CACGGTCAAGCTTATCCTCCCACCGGTCAAGGTC 23319 28 100.0 33 ............................ TGGCTATCGGTTAGATGATAATGGGGAAAAATA 23380 28 100.0 33 ............................ TGACATATGTAGACGGTATTAAAAATTTGTCTG 23441 28 100.0 33 ............................ TTAACCCGTATGGACTTGGAACTGATTTTGTCG 23502 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 15 28 100.0 33 CTTTTCCCCGCATAGGCGGGGGTGATCC # Left flank : CCCCGCATAGGCGGGGGTGATCCTCAATATCATCGAGCCAAAGACAAGCACAGTAACTTTTCCCCGCATAGGCGGGGGTGATCCTAAGATGGACGTTATGGAATCCGCTACTGCTATCTTTTCCCCGCATAGGCGGGGGTGATCCTATGCAAGCTCATAAATAACATTCCTAGCACGACTTTTCCCCGCATAGGCGGGGGTGATCCTTGATAATCTCTAAGTATTCTGATGGGGTACACCTTTTCCCCGCATAGGCGGGGGTGATCCTAAAATGAAAAAGTATGATCTGGCAAGCATTATCTTTTCCCCGCATAGGCGGGGGTGATCCCTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCAGGCTTTTCCCCGCATAGGCGGGGGTGATCCTAAAAAGGCAAGGCTGCCGCGGGGCGGGCTGAT # Right flank : CCGGCAAGCGGCAAAAATCGTGCTTATGTCATGCCTTTTCCCCGCATAGGCGGGGGTGATCCCGCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGATCCGGCGACAGGTTCGGCTACCGGTCTGCGGGTGGTCTTTTCCCCGCATAGGCGGGGGTGATCCTCCACCGTGATAGCAGCACTGGCGGATTACTTTCTTTTCCCCGCATAGGCGGGGGTGATCCCTTTAAGAGGTCTTGCAAAGTCCAGTTGTACCGCTTTTCCCCGCATAGGCGGGGGTGATCCGGACACGCCTTTTACAAAAATCTTGGAGCAGGGCTTTTCCCCGCATAGGCGGGGGTGATCCTATCAAGTGCCCGCCGGTGTGCTCTGGCTGGCGCTTTTCCCCGCATAGGCGGGGGTGATCCTTATCTGCTGTATCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : CTTTTCCCCGCATAGGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23740-24256 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260433.1 Ruminococcus callidus ATCC 27760 Scaffold484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 23740 28 100.0 33 ............................ TCCACCGTGATAGCAGCACTGGCGGATTACTTT 23801 28 100.0 33 ............................ CTTTAAGAGGTCTTGCAAAGTCCAGTTGTACCG 23862 28 100.0 33 ............................ GGACACGCCTTTTACAAAAATCTTGGAGCAGGG 23923 28 100.0 33 ............................ TATCAAGTGCCCGCCGGTGTGCTCTGGCTGGCG 23984 28 100.0 34 ............................ TTATCTGCTGTATCCCAGACGATGAGGTCAGCTG 24046 28 100.0 33 ............................ TGTATACAAATAGCATTGGAGGTGTTGTACAAA 24107 28 100.0 33 ............................ TCAAAATCTTGTGCCATTTTTAAACCCTCCCAT 24168 28 100.0 33 ............................ TATTTTCTTCACTTTCTGCCGCCGTCGTGTAGC 24229 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 33 CTTTTCCCCGCATAGGCGGGGGTGATCC # Left flank : CACAAAACGAGTGCGGTCTTTTCCCCGCATAGGCGGGGGTGATCCCACGGTCAAGCTTATCCTCCCACCGGTCAAGGTCCTTTTCCCCGCATAGGCGGGGGTGATCCTGGCTATCGGTTAGATGATAATGGGGAAAAATACTTTTCCCCGCATAGGCGGGGGTGATCCTGACATATGTAGACGGTATTAAAAATTTGTCTGCTTTTCCCCGCATAGGCGGGGGTGATCCTTAACCCGTATGGACTTGGAACTGATTTTGTCGCTTTTCCCCGCATAGGCGGGGGTGATCCCGGCAAGCGGCAAAAATCGTGCTTATGTCATGCCTTTTCCCCGCATAGGCGGGGGTGATCCCGCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGATCCGGCGACAGGTTCGGCTACCGGTCTGCGGGTGGT # Right flank : CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCGACTTTTCCCCGCATAGGCGGGGGTGATCCCAACGGCGGGACAGAAGTCACGATACCAGAGGACTTTTCCCCGCATAGGCGGGGGTGATCCCCTGACGATCAGCAGCGAAAAGGTGGAGTCCACCTTTTCCCCGCATAGGCGGGGGTGATCCCTACATTTTGACGCTACAATCTGCGGGATTTTCCTTTTCCCCGCATAGGCGGGGGTGATCCCAGGAAGCACAAAGTCATATGACAACAAAACCACTTTTCCCCGCATAGGCGGGGGTGATCCCCACGTTTCAAGCTGCCTTTCAGCTTTGAAAGACTTTTCCCCGCATAGGCGGGGGTGATCCTATAGTTGTTTATGATATGAAGCGTTTCGCGTACTTTTCCCCGCATAGGCGGGGGTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 24364-25553 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260433.1 Ruminococcus callidus ATCC 27760 Scaffold484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 24364 28 100.0 33 ............................ CAACGGCGGGACAGAAGTCACGATACCAGAGGA 24425 28 100.0 33 ............................ CCTGACGATCAGCAGCGAAAAGGTGGAGTCCAC 24486 28 100.0 33 ............................ CTACATTTTGACGCTACAATCTGCGGGATTTTC 24547 28 100.0 33 ............................ CAGGAAGCACAAAGTCATATGACAACAAAACCA 24608 28 100.0 33 ............................ CCACGTTTCAAGCTGCCTTTCAGCTTTGAAAGA 24669 28 100.0 33 ............................ TATAGTTGTTTATGATATGAAGCGTTTCGCGTA 24730 28 100.0 33 ............................ CGACAGTGTGCAGCTAAATCGCCGCATGGTCGC 24791 28 100.0 33 ............................ TCGTTTTGATCCTGATTATTGCGATGGAGAAGA 24852 28 100.0 33 ............................ TACTCCGGAACGAAGATCGTCACACCTACTAAG 24913 28 100.0 33 ............................ GAGATTGTGAAGCAGGCTGCAAAGTACGGTATC 24974 28 100.0 33 ............................ TACTACCAGTTGAGGTGATTATGTATGGAAAAC 25035 28 100.0 33 ............................ CGCACTGTTTGCCAGATTTTGTGCAGTGTCAGC 25096 28 100.0 33 ............................ TCGATACACTGGCGGACATTTTGGAAAAGCGGG 25157 28 100.0 33 ............................ CTTTACAGGAGCATAGCATACTCTGCTGATCTA 25218 28 100.0 34 ............................ CTAAAGGAGGCGATGGCTACATGAAACTTTACAG 25280 28 100.0 33 ............................ CTAGTTCTTGTTGTTGCTTAATAATTTGATTAT 25341 28 100.0 33 ............................ TAAATAATTCACCTCTATGGTATAATAACCATG 25402 28 100.0 34 ............................ CGCTATAAAGCGTCACGTTGACGGCGAGGATAAA 25464 28 100.0 34 ............................ GTGCACGTTGTAGGTCTTGTCGCCCTGTTCAAAC 25526 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 100.0 33 CTTTTCCCCGCATAGGCGGGGGTGATCC # Left flank : TTTCCCCGCATAGGCGGGGGTGATCCGGACACGCCTTTTACAAAAATCTTGGAGCAGGGCTTTTCCCCGCATAGGCGGGGGTGATCCTATCAAGTGCCCGCCGGTGTGCTCTGGCTGGCGCTTTTCCCCGCATAGGCGGGGGTGATCCTTATCTGCTGTATCCCAGACGATGAGGTCAGCTGCTTTTCCCCGCATAGGCGGGGGTGATCCTGTATACAAATAGCATTGGAGGTGTTGTACAAACTTTTCCCCGCATAGGCGGGGGTGATCCTCAAAATCTTGTGCCATTTTTAAACCCTCCCATCTTTTCCCCGCATAGGCGGGGGTGATCCTATTTTCTTCACTTTCTGCCGCCGTCGTGTAGCCTTTTCCCCGCATAGGCGGGGGTGATCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCGA # Right flank : CCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTTTTCCCCGCATAGGCGGGGGTGATCCTTGAGTTACATCCGGATTTGGTGCTCCGAACTGCTTTTCCCCGAATAGGCGGGGGATCCCATCTTTAAATCCTGATTTCAGAGAATTTGTACGGATTGCTGAAAGCAAGAAAATCATGTATAAATTTTACAACATTCCTCGTGATAAAAACAATATTTTTGAAGGATTCACTTCCCGTTGCTTGAAAAGGAATGCCGTGTAAAAAAGTAAAGGCAACGCCACACAGAACTTGTGCGGTGTTGCCTTTATGTGATTTATGAGTGTTTTGACAAATGTACGAATTTTTCAAACAAGCATCAGGGGGAAAATCACTGTCTGTGTATTTTTTCCTGGTGTGCTCTGATTTATTTGCTTGCAGTCAGCGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6-1008 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260381.1 Ruminococcus callidus ATCC 27760 Scaffold1939, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 ............................ TATTGGAAATTCGCCGCATTGCCCACCGCATGA 67 28 100.0 33 ............................ GGTAGGAATCGACATTAGCAAGTGGAATGGTGG 128 28 100.0 33 ............................ CGTGTGTTAAAAAATTACAGCTTCACGGAATCC 189 28 100.0 32 ............................ TAACAAAGGGCTGAAAGCCCAAAGTGCTGTAG 249 28 100.0 33 ............................ TATGCAAGTACAAGCCTTTTCCATGATACTTCA 310 28 100.0 33 ............................ TGGACAGTTGCTTTTGGTCGATCTGATCGAAAA 371 28 100.0 33 ............................ CTTGACGAATGACAACGTGGATCCCCCAGAACG 432 28 100.0 33 ............................ TATATTTGCCATCAATAAATTTGTTACCGTTTG 493 28 100.0 33 ............................ CAATATCTAATGCAACATGTTTTCCGGCATGAT 554 28 100.0 33 ............................ CCACGGCAGTAAGTCAAGCAATGTGTACATACG 615 28 100.0 33 ............................ TCTGATTGACATCTTGGGGCTTGGCGGCGTAGC 676 28 100.0 33 ............................ TACACCTGCAAAGAGTGGAACCGTCCTGTTTCA 737 28 100.0 33 ............................ TTATAGAAGAATCTATTTTAGACTTGTTCATAT 798 28 100.0 33 ............................ CTGACGGCACTGCACACGTACTGACTGCCAAGC 859 28 100.0 33 ............................ CATCGAGACGAATTCCGGCAGCCGTGCCAGTAG 920 28 100.0 33 ............................ CATGGTTTCCATGGTAGACGCACCGACCTCCGT 981 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 33 CTTTTCCCCGCATAGGCGGGGGTGATCC # Left flank : GTAGCC # Right flank : CGCTGCAATGTCATTAACTTAAAACGGCCCTTGAATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCATAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //