Array 1 263182-264491 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAFA01000003.1 Escherichia coli strain C347 NODE_3_length_355270_cov_96.086903_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 263182 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 263243 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 263304 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 263365 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 263426 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 263487 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 263548 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 263609 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 263670 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 263731 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 263792 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 263853 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 263914 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 263975 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 264036 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 264097 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 264158 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 264219 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 264280 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 264341 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 264402 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 264463 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 290191-290950 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAFA01000003.1 Escherichia coli strain C347 NODE_3_length_355270_cov_96.086903_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 290191 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 290252 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 290313 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 290374 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 290435 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 290496 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 290557 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 290618 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 290679 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 290740 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 290801 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 290861 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 290922 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //