Array 1 106415-105836 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL585425.1 Streptomyces sp. NRRL WC-3549 P265_Doro1_scaffold45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106414 29 100.0 32 ............................. TCCAACTGAACGAGACTTTGCGGCTGCTGATG 106353 29 100.0 33 ............................. TCCGCGGCTGAGGTCCCGGCCGCTCGCCCGGCC 106291 29 100.0 32 ............................. TGGAACGGGGTGTCTCGCGGGAGGATGCCGAG 106230 29 100.0 32 ............................. GAACGTCCACGGCCCGAGGCCCGCCCGTGACA 106169 29 100.0 32 ............................. TGGGCGGCGAGGCCGAGGAGGAGGACCAGGAC 106108 29 100.0 32 ............................. AACGAACCGTCGCCGTCGAGCACCACGACGTG 106047 29 100.0 32 ............................. TTCCTGCTGACTGGGAAGACGCTGACCGATCA 105986 29 100.0 32 ............................. GCGTCCAGGTCGCGGCGGTCTGCCGCACGGGT 105925 29 100.0 32 ............................. TCCACGGCCTTGACGGCCGGTACGCCTGCGGA 105864 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : ACGCATCGTCACCGACATCCAACAACTCCTCGACCCGAACACCACCTACGAAACCCCCGATCCCGAGGAACAACTCGTAGACCTCTGGGACCCGATCGCCGGAGCGGTCCCAGGAGGCACCAACCACGGGAGGGACATGCCATGACCCGTGCCGCAGGAAGGCGATACGCATGTCCTCGATGATCGTCATCTCCGCCACCGCAGTCCCAGACCATCTCCGCGGTGCTCTCACCCGCTGGCTCCTCGAAGTCACACCGGAGCTGTACGTCGGCACTGTCTCCGCGAAAGTCCGCGACGAACTGTGGGCATCAGTGGCCGCCTGTACAGGCGACGGCATGTCCGTCCTCGCGTACCCAGCCGACAACGAACAGGGCTTCCAACTCGAAACGGCAGGGACCCGGCGTCGAACACCCACCGACTTCGACGGCCTGACGCTGATTTCCTTCCGACGAGACATTCAAGAAATGGCAAATCCCCTCTAAGATGCCAGGTCAGGAAGG # Right flank : GGACCGCCACCGGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGTGAGCCGCCACCTGGAGGAGCCGCTGTACCCGTGCCGGTGTCCTCTCCGCGCGAGCGGAGGTGAGCCGAGCAGCGCTACGCCGCTCGCACCGGTAGCCAGGTCCTCTCCGCGCGAGCGGAGGTGAGCCGCCGCCCGCCAGATGCACGAATGGTGCGATGAAGTCCTCTCCGCGCGAGCGGAGGTGAGCCGCGCGTGCGCCCATCGATCTCGGCAACCTCGACGTCCTCTCCGCGCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116066-117494 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL585425.1 Streptomyces sp. NRRL WC-3549 P265_Doro1_scaffold45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116066 29 100.0 32 ............................. CGTGCATAGACTTTAGGTATGAAACTTCGTAG 116127 29 100.0 32 ............................. GCCCGAGGGAGCAGACCCCGGGGTTTTGGTAC 116188 29 100.0 32 ............................. TGCCCGCGACAGCCTGTCCGACAAGACCGTCA 116249 29 100.0 32 ............................. GCTGCCCAGACACACGGGGACGGTGAGGCTGT 116310 29 100.0 32 ............................. GACGTCCAGGCGCAGCGCGGGCGCTTCGACAC 116371 29 100.0 32 ............................. TACCTGAGGCCGCCTCGGGCGAGCTGGATCTC 116432 29 100.0 32 ............................. CAGCGCCCAGTTGCCGAACGCCGACTGCGCGG 116493 29 100.0 32 ............................. GGGTTGATCCGGTTGCTGCCGTCACCGATCCG 116554 29 100.0 32 ............................. TGCCCCCATGTGATGCCGGTCCGGCTCCGGCC 116615 29 100.0 32 ............................. GCGAGGGCGGTGTCGTCGGGGGTGGACCAGGC 116676 29 100.0 32 ............................. CCCTACGTTGCCCCCGCTCAGCTCACGGGTAC 116737 29 100.0 32 ............................. GCCGAGCGCTACGCGGCGGCGGTCCAGGAACA 116798 29 100.0 29 ............................. CCGCCGGTCAGCCAGCCCAACGGGATCTC 116856 29 100.0 32 ............................. GTGTACGTCGTGGGGTTGGCGAAGCTGTAGTT 116917 29 100.0 32 ............................. GGTTTGCTCGCCGCATCCGCCGCGGGCAGCGA 116978 29 100.0 32 ............................. CCGGAAATCCGCAGGTGGCAGGGGCGCCGCAT 117039 29 100.0 32 ............................. TCGCCAGGTCCGGCGAGGCACGGCACCGTCAT 117100 29 96.6 32 ..T.......................... GAGCACGACCGTGGCCACCATCCGCAGCATCC 117161 29 100.0 32 ............................. GTGGCGTTGTCCATGGCATCTCCCTGACTTGT 117222 29 100.0 32 ............................. CGTGAGAAGACGCCGTGGAACGAGGACGAGGT 117283 29 100.0 32 ............................. ATGGGCTTGGCGTAATTGGTCCAGAGCTCAGA 117344 29 100.0 32 ............................. TGTCGAGCGCGGCGTCCTCGCCCGGTTTGAGA 117405 29 100.0 32 ............................. GGGCCGCCCAGCAGACGCAGGTGACGGCCGCT 117466 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GAGCGGACGAGTACGCGGGATCGTCCCGGATCTCGGCGTAGAGATCAGGCACCTGCGCCTGAAACGGCGGGGAGATCTTCCCTACATCGTGCAGACCTGCCCAGAACGACACCACAGAACGCGCATCCTGAGCACTCAACCCGAGTGCGTCCGCGATGCCCAGCCGGGTCCTGTCGCTGAGGAGCACGTCCCACAACTGCTGGAACACGGCAGCAGTATCAAGAAGATGGCAGATCACCGGATACGGGCGAGCCAGCCCCAACTCCTTGCCCCAAAGGCGAGCATCTAACGGGCAATTGCCCGTGGCTGCGCCACCACACGTCGTCATGAGCCAGAGATACCACCCAGCACTGACACGGGGAGGAGAACCCTTGGCTCCGCCCCGGCAACGTACTGACAGCCGTACACTCACCTGGCAGTCAGCGAAGGGCAAAGGCACGGACTCCATGGATCATGGCAAAGGGATTGCAAACCCCCTGAAGAAACCCAGGTCAGGAAGG # Right flank : GCTGGCCACCCGGGCACTACTCCTTCTCCGCCCTCGACTCAATGAATCATCGAGTATGCCTGGCTCGACCTGCGGCCTGGCGCGGTGCAGGCAGCACGAGCGGAGCTAACGGCGCGGCCGGGACGGCGCTGTCCGACTGCGGGCCGGCTGCTCTCGCTTGCACGCCTTCGCCCACGCCCCGGCCGTCGTGGTCTCGTGCGGCTGCCGGTCGGTGGCCGTTCGCCGTTCGGTCTCGGAGCCCTGGCCATCGCGGCGTCGAGGGCGGCCGCGACCGCGTGGCGGGTGGCGGATAGCGGGTGGCTCCGGTGTAGACCTGCCGGTCATCGCAGCGCGGGAAGCCCCGGCCGGAGTCGAGCAGCGCAAGCCCCGGCCGGTCGGCCAGCCAACCAGGTCGATGATCGGACCGCCCAGCCGCACCTGGTCGGTCCGGCCGTACGCAGCGGCGACCCCGTCCGGTCCGATGACGCGGGGTGGCCTGTCAGCCGGGCCGGACGTCTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61331-61192 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL585427.1 Streptomyces sp. NRRL WC-3549 P265_Doro1_scaffold47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================ ================== 61330 29 100.0 28 ............................. CCAGGTCGCGGCGGTCTGCCGCACGGGT 61273 29 89.7 22 ......................CCG.... TGACGGCCGGTACGCCTGCGGA CG [61250] 61220 29 82.8 0 ........................NNNNN | ========== ====== ====== ====== ============================= ============================ ================== 3 29 90.8 26 GTCCTCTCCGCGCGAGCGGAGGTGAGCCT # Left flank : ACCCGGTTGAGGTAGCTGGTCCTCGTCTGGTCGGGGCTGTGCACCTGGCCGGGGCCGAACTCGCCGGAGAGGTCGTAGACGACGATCTCCAGCGGTGCGGACGTGTCGTGGGCGTGCACCAGGGCGGCCAGCCGCTCCAGGACGTACGTGCAGGTGGGGCCGCCGCCCACGATCGCCAGACGAATCGGCGTGGGGTTCACGGAGGTGTCGGTCGTCACCGGTTCACCACTCCCTCTCTCTTGATCGGCCGGAAGATCAGGCATGCGGGGACGTGTGCCGGGCCACGACGGCGTCGAGGGCGGCGAAGAAGCCGGTGAGATCGGCCTCGGTGAGCCGGCCCATGTTCGCGAGCCGGAACACTCCGGCGGACTTCCCCTGGGTGGCGTAGATGACGTATCCGAACTCCTTGAGACCGTCGTGGAGTTCGTCGTACGTCATACCGTTGGAGCTGTCTCTTATACACATCTCGCCCTGCTGACTGGGAAGACGCTGACCGATCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCGGCAGGAGCAGCTCGAAGCCCCGCTCCTCCAGGCCCTCGCGGATCTGCCGGGCCCGGGCCCCGTAGCGCCGGCCTCGGGCCGCGACGCCCTCTTCGAGGGTCAGGTCGAGCGCCGTGTCCAGGGCCCGCAGCACCTGCAGCGCGGGCGTGAACTGCGGTACGGAGGCGATGACCTGGGCGCGGTAGTTCGCGTACAGGTCGAAGTAGAAGGTTCGTGCGGGCACCGGTTCCAGGGCCTCGAACCGCGCCCGGGGCGCGCACACGAAGCTGATGCCGGGCAGGCCCTCCAGACACTTGTTGGCGGTGCCCACACACCAGTCGACGTGGTCGACGACCACGTCCAGCTCCTCGGAGCCCAGACTGCTGATGGCGTCGACGATCAGCGACCTGCCGTGCCGGGCGACGAGCGCCCCCAACTCGTGCACCGGGTTGAG # Questionable array : NO Score: 4.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.59, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //