Array 1 55648-55323 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYM01000020.1 Acidithiobacillus thiooxidans strain CLST scaffold00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 55647 37 100.0 35 ..................................... AGGAACACCATATTGCGCTGAGTATTGCGCAATGT 55575 37 100.0 35 ..................................... ATATCTATCTCTGCCGTCATACTTGAATGTTATTC 55503 37 94.6 35 .......T.................C........... TGGACAAAAATACGACGCGTGATATGACCCATTCC 55431 37 100.0 35 ..................................... CTTTTGAATTGTAATTACTTGATTTGTCTTTATAG 55359 36 81.1 0 ...................-...C.AAC.C.C..... | T [55344] ========== ====== ====== ====== ===================================== =================================== ================== 5 37 95.1 35 GTGATAGCAGCCATTGCAGAGGCATGGTATTTGCAAC # Left flank : CCCGGATGCAAACGGTTCATATGATATGGGGGTCATGCAAATCAACTCGATATGGTTACCAAAGCTGGCCAGCATGGGCGTCACCCGGCACGAGGTTATTCATGACGGATGCCAGAATGTCATGATCGGGACCTGGATTCTGGCCGGATACGTGCACCGCTATCTCGGCAAAACCGGGTTACAAAAGGCTTGGGAGCATCCAGGCCGTTTCTGGCGCTCGGTCGGTGACTACAACTCGCACACACCCACATACAATAATGCGTATCAAACACGGGTAGCCAACAATTATCGGCTGATTTCCGAAAACATTGTGCACAAAAATATTTCTCGATAACGCGAACCTCAATCGGCGGCGCAAACACGGGAGGTTCGCGCAGCAATGAAATCACGGCATATCCCGGATAAAACCCTTGTTCTTCAGTTGTTACAGGAGCAAAAAATTGAAGGTTCGCGGAATCCGATGTATTATCTTTGTGATTACGCGGTATTAGAACGCTGGA # Right flank : TTCTTATAGCACAACCACAAACATCGTAAGGCACCCATCTATGGCGCTACCCGTCTAAGACATGCACCCAAACCAGCCACAACATATTATTCGGTTTGGTCGAAGTCCATCTTTCGCTTTATAATGACGGGATTGCAAGCCATTTCATCCAGAAAGACAGAAATAAATGCCCGTCAAAGTCACAAAAACCATAGAAATAGCCAACAAATTTCTTGAGCAAATCAGGCTGCCCAATGCAGAAATCGTCTCCAGCGATACAGAGTATGCAGACAGCTATGCCATCGTTGCACAATTCATAAGCAATCTTATAAAGAATAAAGAAAACAATGACTATATTGCCGGCAGGATTGCAGGTGCCCTATCAAAAATTGGTCACGGCACAACGCCGCCATCCGCTGAAAAGGAAACCGCTACGGAATGGATTGCCTGGCTGAAAAGCCTGCCCGAGATCGCTGTCATTCTGGCGGAAAGAGAAAAAATCGCGGCCACCGCCAATCCTC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATAGCAGCCATTGCAGAGGCATGGTATTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 62112-61840 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYM01000020.1 Acidithiobacillus thiooxidans strain CLST scaffold00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================== ================== 62111 27 100.0 34 ........................... GGCGAACGCGGCGAAGGCGTTGGATGTGAATGCG 62050 27 100.0 34 ........................... GTAGGTCCACAGGGTATTCGCAGACATGCCGTAG 61989 27 100.0 36 ........................... CGGCAAGGGCCGTGGATTTTGTGGATAAGGCTCAGG 61926 27 100.0 34 ........................... GAAAAGCCTGGGCTATGAGGTCTGCGTGGCTTTG 61865 26 96.3 0 .......-................... | ========== ====== ====== ====== =========================== ==================================== ================== 5 27 99.3 35 GTTGCCCCGTGTATGCGGGGATGAAAG # Left flank : TTCTGTTGGGGGATGCGGTAATTTAAATAGTAACAGACATGGAAGGCAAGCACGCTGACCAGCAGCCAAGGAGATCGTTATGCACGTAGAAGCAACGATAAACGGGAAAGACTTCAAGCTCAACCTTACCCCGGGTAAGCAGAGTGAAAACCACGCGGCCATAAAAGCGGCCGTGGAATCCACCGGCATCTCATGGCTGGAATCCGAGATCCTCGTCGTTAACTTCCCGGAACGTGGGAGAGGCTTGAACAAGCAGTCCGGCTACCAGAGCCTGGGGGCGAGCGGATGATGACCCACCCCACCCCCACCGAAATCAAGGCCTGGCGCGTATCAGCCGGGATCACACAGGCCCAGGCGGCGGCGCTAATCGGCTATACAGCCAGATCGTGGGAAAACTGGGAGCAGGGGGCGCGGCCTATGCGCCCCGTCCTGCTCGATCTTGCTCGGCGATCTGTCAATCCACCCAGTCTGCCAGTATCGCCCATATAACTAACCCACTA # Right flank : GCAGTCAGTATAAGCGCAGGATCGGGCAAACAAATAAAAAAGGAAACCCAAACCCGATTGTAGCTGTAGGGGCCTTGTTTTTTCCATGCGTGATTCCAACAAACCAAAGAGGCTTTTCCAGTTGATGCAAAACAAGATTCATGATAATTATTTATTATCGTGAATGATAAAGGGGCCTCCCCCATGCCTGAAACCAACGAAATCCATCCAGAATTTTCAGAAATAAGTCGCCGGATCAGGGTTGTGAGCACACCCAACACCAGCCAGACCTATCTGAGCCGCATCAAGGGCTATTTGATCTGGTGCCGTAAAAACAAAATCGATCCGCAACAAGCCTTGCCAGAGGTTATCCTGGACTACCTGGCGCACCGGGAATGGAAAAAGTCCACCAAAACCACGACCATGGCCGCACTGGAAGCCCTGTACGAAGTGATGAGTGGAAACTGGGGTATCGCAGAAAATCCCGCTTATCTGGCCAGCCAGATAAACACGGAAAAGCG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCCCGTGTATGCGGGGATGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //