Array 1 244567-242544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVNF010000003.1 Clostridium jeddahense strain EE-R19 NODE_26_length_253316_cov_31.016920, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 244566 31 100.0 35 ............................... TTTCAGATTGAGGCTGGACGTATCAAGCCCGGCCG 244500 31 100.0 35 ............................... TCCCAGCTCAAACAACAGTACCGGAAAGCCTGCAG 244434 31 100.0 35 ............................... ATGCTCATATCCCAACTTCATCTGGTCACAAAACG 244368 31 100.0 35 ............................... AATCGTTCTATGGTCTTTTCAAGTCCCTCACGCTG 244302 31 100.0 35 ............................... GCAGCACCTGTGGCGACAGGATATTGATACGGGCG 244236 31 100.0 35 ............................... TTTCCGAGCTTGGCTTTCCTGTTATCAGCAAAGCG 244170 31 100.0 36 ............................... TCCAAACCATCTGCTGCGACAATCAAGCGCGTAATG 244103 31 100.0 35 ............................... AGCCGGATAAACGCGTAATCGTAGACCCACTTGCG 244037 31 100.0 35 ............................... GAACATATCAATAGCTAAATGATTTTTATATGAAG 243971 31 100.0 35 ............................... ACGATGCCAGGCATGGTGGAACATCATAGCACCTG 243905 31 100.0 35 ............................... CAGAGTAAATCGCCTGAAAGGCCGTATGAAAAAGG 243839 31 100.0 34 ............................... TTCCGACTATCCGCAAAACCGGGTCGTACTCCAG 243774 31 100.0 35 ............................... TCCTTTTAACGCCGCCGGTGATGACGACGGCACAG 243708 31 100.0 35 ............................... CAAATTTATCTCCCCTTTTTATAATTATATTATTG 243642 31 100.0 36 ............................... ACCTCTCCGCCCATCACTGGCCTGACGCTGGACACG 243575 31 100.0 35 ............................... TATGGTTAAATGGAATAAAGCGCTTGAGGCAACCG 243509 31 100.0 36 ............................... AGCTTTGCAATCGGGACTCCGTCACGAAGCAAATAG 243442 31 100.0 35 ............................... GTCCAGCCCGTCATCCTGATATGCATCAAGGTCGG 243376 31 100.0 38 ............................... TATAGTTTTTCATTTTGAGTATACTGAACTTAAAAATG 243307 31 100.0 38 ............................... TATAGTTTTTCATTTTGAGTATACTGAACTTAAAAATG 243238 31 100.0 35 ............................... TGTTCCCCACCAATCGGCCACTTATGAGTAGTGGG 243172 31 100.0 36 ............................... ATCCCCGGTGTAGCCGGGAACCTCCTGAATAAGCGG 243105 31 100.0 35 ............................... CAAGTGCGTACCGTTGCCTATCATCACGCCGTCAG 243039 31 100.0 36 ............................... CGGCGTAAGATTTTAAGATCGAGCTTTCGTCCAAAG 242972 31 100.0 35 ............................... TATTACGATATCTTTTCGTATGATTACGGTGTGGG 242906 31 100.0 34 ............................... ACTTTAGCGTCTTTAACGGATTCCGCCACCGATG 242841 31 100.0 35 ............................... TTGTTCACCGTTCCGCCTCCTTATCTCCCACACAG 242775 31 100.0 36 ............................... CCCGCAGCAAGTGGCTGAAAGAACCCCGTGCCGCGG 242708 31 93.5 36 .......T....C.................. CTGCATCTCTGCAATCAGCATAGGGCTGGCGGATTG 242641 31 93.5 35 ............C...A.............. AGCAATCAAGAGCTTTTCCAAAGGGGCGGTTATTG 242575 31 87.1 0 .........G.AC...A.............. | A [242558] ========== ====== ====== ====== =============================== ====================================== ================== 31 31 99.2 35 TCGCTCCCCATGTGGGGGCGTGGATTGAAAT # Left flank : CGCTTTTAATGATACTTATCCCTTTTTTCCTTTCATTTTATAAAAGCAGGGTACCGTTATGCGGTACCCTGCTTTGCTTTGTGAAAGGTGATTGGAACATGTGGAGCAAATTGCTGCGGATATCATAACAAAAAAATTTATATTCTGATCGAAAAGAATACAATACCTGTTGAGCTTTGTTGGTTTGCGCAGTAAAATAAAAATAATTAAAAATTCTGAAATCTGTTGGGGCAGTGGGCTTCGGATTCAATTTTGAAAAATTATCTGTCTAAAATAGAATACATGGGTGTAAAACCCAGCTGTTCTGTGGAACCGGTTCCGATTATGCAGTGCGAACCATCAGCGAACAGAAAACAGCAGGGGTATTCGCGCTGATTTTTGGTAATTTAATTATTTTTCAGAATAATCATTGCATGATTAGCGGACGCGAAATTGATGTCTGAATAAAAGTTTGTGTAAAGACTCTTATTCTATCTGTTCGGCTTTGTCTATTTTTGCAG # Right flank : TACATGCAATCTTGGTTCGTGTAGTAGCAGAATTGCACCCTTCCATAAAACTTTTGGACAATCAGCCGCGAAAATCCGGTAAGGGATTCTCTGGCGGCTGATTGTCCCACCTTGTCCTTTCTACATATAATGAAGCACCTATCAAAAAGGAGGGTTTGATATGTGGGCTTGGTATCATTGTCATTGGTGGTTCTGCTATAACGGTCACTGTATCCCGTGGTATGATTAAGAAACGAGTGCAGCAATCGAGTCTGATTTAAAAATCGATTGTGTGCAGGACTGTATGAACACATGGATTTTCCATACACTATCCCCGAGGTGATTTTGTATGGATTATTCCGATTTTTCTTTTCCTCAGGCTCTGTCTGAAGATCGCAAGCTGAAAGAGTTTTTTGATTCTCTTCCGGAGCAGGATCAGCTGCGGCTGATGCAGGGCTGCAGCTCCTACGGCGAATTTTACGACAGGGTCGTACAGGCAATCCCAAAATGCTGAAAAAGGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGTGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13114-7006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVNF010000034.1 Clostridium jeddahense strain EE-R19 NODE_51_length_21917_cov_31.966557, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 13113 33 100.0 36 ................................. GAATCCTTGCCTGGCCGCTACTGCTGTGCGAAGAGC 13044 33 100.0 35 ................................. CCCGGTCACCACCACGGCACCCGGAATCTTTGCAG 12976 33 100.0 34 ................................. ACGGCGCGCCGATCCGGCTTTTCCGTGGATAATC 12909 33 100.0 34 ................................. AGGCCGGGAAACCAACCGGCAGCTTACAGACAGC 12842 33 100.0 33 ................................. AGGAAATCATCTGGGTAATCAAAAACTACGGCG 12776 33 100.0 34 ................................. TAAAAGTCTCACGCTTGACCGAATAGATGTGAAC 12709 33 100.0 35 ................................. AATCCGCCGCGTAGCCAGCGCAGCTGGGTGAACGA 12641 33 100.0 33 ................................. CTTTTCGTTCAGTGTCTTTTCTGCAGTATCGTA 12575 33 100.0 35 ................................. ATCATTTGAGTGGTATACCGGTCAGATATCTGGAA 12507 33 100.0 33 ................................. TCGACGTCTGAAATGTACCGGACAAGGGCCCGC 12441 33 100.0 36 ................................. CACACCATTGACATACACACTAAACTGCGGTGCGGT 12372 33 100.0 33 ................................. ATCTCCCAGTGCAGAAGTGATGCTGTCCCCAAA 12306 33 100.0 35 ................................. TCGATCAGGAATACGTTGAGAACCTCAAAAAAGAA 12238 33 100.0 34 ................................. TCTCGTGACGCTAAATGCGGTATTCCGCATACCG 12171 33 100.0 36 ................................. ATATAATCCTCCTGCAGCTACACTTTTTACGAGGTC 12102 33 100.0 33 ................................. ATCATATTTGGGCCGGAGCGAAAGGCAGATGTA 12036 33 100.0 34 ................................. ATGCCACACCGTCCAAATGGATATTGGCAAGGGT 11969 33 100.0 35 ................................. AGGAAATCATCTGGGTAATCAAAAACTACGGCGGC 11901 33 100.0 33 ................................. ATAGACGGGCTGGAGGACGTGAGGGCTAAAACC 11835 33 100.0 34 ................................. ATTTTCAAATACGCATCAGGGTTTTCTTCTATCG 11768 33 100.0 35 ................................. TGTTTTAATACGCGACCGTTTGCACAATATTTCTT 11700 33 100.0 34 ................................. CTCCCCTCCTGTTGTAAAATGTTGGCAAGAGGGG 11633 33 100.0 35 ................................. CTTTCTGAATTTGACGGAAATCCCGGAATGCTGAT 11565 33 100.0 36 ................................. TACGCAAGTGATTTGCGTTGTGGTACACCATCAGGG 11496 33 100.0 33 ................................. GATTTGAGTCATGGGCCGGTTGGAGTACGACCC 11430 33 100.0 34 ................................. CCGATTGCAATTTCTTGCGTTTCGAAATTGTACT 11363 33 100.0 35 ................................. TCACATTTGGAGATTGGCCCTTTGCAGTATTCACA 11295 33 100.0 34 ................................. TACCAGACCGGTGCTGCCATCCACCTGCGTAACC 11228 33 100.0 33 ................................. CAGACGAGCTGGCCGTGAAAATAGCGGACACTT 11162 33 100.0 35 ................................. GAGAGCAACGCCAGCCTCAAGGGCCTGCTACGCAA 11094 33 100.0 33 ................................. CAGGCCGCAGCAGAGGACGGCGAGGGCAACGAG 11028 33 100.0 36 ................................. TTCCCGGCCCATCAGAAATGATTCCCGGTACTTACC 10959 33 100.0 34 ................................. TTTTCCAATGACCGGATACCCATACTTTTTGATA 10892 33 100.0 34 ................................. CACGTCCTCATGCCCAAGCTGGTCCCGCGCGGTG 10825 33 100.0 34 ................................. GATCTTTGCTTTCTGGTCGGCCGAAGCTTTGTAT 10758 33 100.0 33 ................................. AAAATAATAAATAAAAAGCCGCTCCACCCTGTT 10692 33 100.0 34 ................................. GTGCGACATTACTATTGGCAGTGTCCTATCCGCA 10625 33 100.0 33 ................................. TATTCCGTGGCTCCGGATGGATCACTGAGCCGC 10559 33 100.0 33 ................................. TGCGTTTGCAGCCATCTTTCAGGCCCTCATATC 10493 33 100.0 34 ................................. ACCGGAATTCCCGCTTGGTGGGACTCGCTCTGGG 10426 33 100.0 35 ................................. TTCTGCACTTGATGCCCAAACTGCCAAGGCTGGAT 10358 33 100.0 35 ................................. CAGCATCGGAACATAACCATCCGTGCGCGTGTACT 10290 33 100.0 34 ................................. AGGGCTTTACGATTGGCACGGTAGGCGGTTTGCT 10223 33 100.0 34 ................................. ACCCCGCCCAGCTAAACCCTAACAGCTACAACCT 10156 33 100.0 35 ................................. TACCGGCGGCGTGACCGCTGATTACACCCTGACAC 10088 33 100.0 34 ................................. TTTGCGGCCAAAGGCGACGGCCCCCGGCTGAGCG 10021 33 100.0 34 ................................. TCGTTGTGTTTGGAATAATTGCTGCTTTGGGGCC 9954 33 100.0 36 ................................. TTTCAGGGAGTGAAAAAACATGGCAAATAACATCAA 9885 33 100.0 33 ................................. TGGATGAACTCGCAACACGATCCAATCATGAGG 9819 33 100.0 34 ................................. ATCCAGCAATTTCGGGTCAAACTCGTCCATGATC 9752 33 100.0 36 ................................. TCGCCATCTTGCCCACTGTTCTGCGAAGTCAACACC 9683 33 100.0 34 ................................. TATTTGTGGTACAAAAATGGAATTTTATAACAGC 9616 33 100.0 34 ................................. CGTACCGGCCGCAGCGTACTCCTGCCCACCGCTG 9549 33 100.0 34 ................................. GGCCTGGCGCTGCGCTTCTTTCAGAGTATTAAGT 9482 33 100.0 34 ................................. TGCAAGCCACGACGCCATATCATCGTTATCGCCC 9415 33 100.0 34 ................................. GTTATCCCCGGATGACTTTTTCAGCGTTTCCAGC 9348 33 100.0 35 ................................. GATTCTAAGTCCGTGGTATTTGCCGCGGGGGACCG 9280 33 100.0 35 ................................. GATTATCGCAAAACTCAACATCAGGATTGCTTTTG 9212 33 100.0 34 ................................. CCTCCAAGACTCCACGAAAGCGACCGTTTTACCG 9145 33 100.0 35 ................................. CCTGTTAATGGTAGTCTACCATAAGTAGAAAAGCT 9077 33 100.0 35 ................................. TTGCATCGGATATCATTTTAGGCTTAAGCGATAAA 9009 33 100.0 36 ................................. CTGTGCACTTTGGCGGGGCATGGGAAAACGCCAAAC 8940 33 100.0 35 ................................. AGCTGAGTATCCGCCGTGCCGGCACGTTCGTTGCG 8872 33 100.0 35 ................................. CCTTACATAGAGGATATCGCCGGGGCGGTAAGGCG 8804 33 100.0 35 ................................. AGCTGAGTATCCGCCGTGCCGGCACGTTCGTTGCG 8736 33 100.0 33 ................................. GATCGGCCATCATCGTGAAGTAAGTGTGGCGGC 8670 33 100.0 36 ................................. GTTGTTAAAGGATAGGAGGCCCCATGAAAAACGCAT 8601 33 100.0 34 ................................. GTCAAAAATCAAACACGCCGAACGCTTGCCATCT 8534 33 100.0 33 ................................. AATGTTATTTGAGGAGGGCAACATAATGGATAA 8468 33 100.0 36 ................................. AAGGCAGCCCGAAAGAAATAGCCGCCCTTGAGCGGG 8399 33 100.0 34 ................................. CCTGCCATTGTGTCAAAGCACCGAATTAGGTAAC 8332 33 100.0 35 ................................. ACTTAAATTATACAGTCTGAAAGGAGATTGTCAAG 8264 33 100.0 35 ................................. TCTCAAACTCAATTACCCATACCCAAGGGTTAGCC 8196 33 100.0 36 ................................. TTATTTTATGCGGGAAGGAGGGCGAAAAGGTGAAAA 8127 33 100.0 34 ................................. TAGCATCAACCGAGAACTGGATGAAATGCTGGAA 8060 33 100.0 34 ................................. TTCTTCCGGGCAGAAATTTTTTCGGGTGCCGTCC 7993 33 100.0 37 ................................. CCCGCCTTAAACAGCTCGCCGGGCAGGGCTTCGCCGT 7923 33 100.0 35 ................................. CGGCTTGCGGGCGTAGGCAAGCCATGTGCGTCCAT 7855 33 100.0 34 ................................. AGGACTCAGGTGTGGGAAGATCAGAAAAAGCGGA 7788 33 100.0 35 ................................. TGGCAAGGAAATCCAAAAGCACATAGGCCGGCAAA 7720 33 100.0 34 ................................. GGATTTGTTTTCTTGCTTACGCTTGTACACATAC 7653 33 100.0 34 ................................. ACTATTTGCGAATTTACAAGAGCATTCTCAAAAA 7586 33 100.0 34 ................................. TCTGAAGCTCAAGGAGGCTCAGCAGCGGATCGAG 7519 33 100.0 35 ................................. CCACACCCGGGCGGAAACCTGTCCTTTGAAATCAC 7451 33 100.0 38 ................................. CATCATTAGAAAAGCATGAAGCTACTGCGTACATGGCT 7380 33 100.0 34 ................................. TTGGCCGTGCGCTGTCAGCGAGCCTTGCCGGATC 7313 33 100.0 35 ................................. CTCGTCCTGGATTGTAATCTTCGCCATCTAAACCA 7245 33 97.0 35 ...................G............. TTGCCTATGCCAGAAAGCCGGAGGTGGAGTGATGG 7177 33 97.0 37 ..............A.................. TCAGAAGCGAGATAATTTGTCTTATGAAGACGCTCAG 7107 33 100.0 36 ................................. AGCGTGCCATCGGAGTTGACGCTGCGGGCGTTGTTG 7038 33 72.7 0 .C..CT....G.AT.....G...A....A.... | ========== ====== ====== ====== ================================= ====================================== ================== 91 33 99.6 35 GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Left flank : TATCCGCGGCGATATCGATGGGTACCCACCGTTTGTCTGGAGGTAGACGATGCTTGTCCTGATTACCTACGATGTGAATACCGAGGATGCCAAAGGCAGTAAGCGGCTTCGCAAGGTTGCAAAGATTTGCGTGAATTACGGGCAGCGCGTGCAAAATTCTGTGTTCGAATGCCTTCTGTCCCCTGCGGAATTATGTATTGTGAAAAGCCAGCTGCTTACTGTTATGGACGAAAAGAAAGACAGCCTGCGTATTTATCATCTGGGAAACAATTATAAAAACCGTATTGAACATTACGGAGCGAAACAAACATACAGCCCGGAAGATCTTATGGCATTTTAATGCGAACCGCAAGCGTACATCAAATCCGCGGGGGATTCGCGCATGAAATGGGATCAATTTATAGTGTGAAGCTTTATGAATCTGCGATTTATTTTCTTTTTAATGTGAATGATTACTAAGCTTTAATCAAGATTGTTCCGTTGAACTTGTTTGTTTTGCA # Right flank : TTGACCAGTCTGACAAATGATACTTTGGATGTTTTCCCGCCTGCATATCAAGTTTTTACACTGTGCTTCCTCTGGCCGATTCAAGTAAATATTTTTAAAGTCGATGGAATGCCCCGGTTTACTCTGCGTTTACATTGTTGGTATACTATAAACAATAGAAAACCGGAGAGGAGGCGCATTCATGGCCGCCATTTTAGTCATTGATGATGATCCATATATACGGGAGCTCGTGAGCACCTTACTGCATAATGAAGGCTTCTCGGTACAGGAAGCCCGGAATGGGCGGGAAGCGCTGCAAAAGCTGAGTGAAACGAAAATCGACCTTTGCGTGCTGGATTTGATGATGCCCGAAATGGACGGTTTCGAGTTTTGCGGTTATGCGCGCCGGTACTATGAGGATTTGCCGATTCTGATGCTGACGGCGAAGGGCGAGATCAGCCAGAAGGTGAAAGGGTTCGAGCTTGGAACAGACGATTACCTGACAAAACCGTTTGAAGGCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //