Array 1 714-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCT01000023.1 Listeria monocytogenes strain ICDC_LM0111 LM0111Scaffold21_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 713 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 647 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 581 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 515 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 449 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 383 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 317 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 251 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 185 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 119 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 53 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : G # Right flank : CACTTACTGAACAACATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 252-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCT01000005.1 Listeria monocytogenes strain ICDC_LM0111 LM0111Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 251 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 185 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 119 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 53 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CGAACTTCTTCACCATCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 6496-5401 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCT01000014.1 Listeria monocytogenes strain ICDC_LM0111 LM0111Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6495 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6429 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6363 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6297 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6231 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6165 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6099 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6033 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5967 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5901 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5835 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5769 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5703 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5637 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5571 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5505 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5439 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5404,5407,5412] ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //