Array 1 37003-37425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWE010000016.1 Clostridioides sp. ES-S-0077-01 CD-ESS007701gDNAQiagen-xx-EN-USA-2019-092-PK_132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 37003 29 100.0 37 ............................. GTGTTAATATAACTTTTCCCATCTTTCTCACCAAACT 37069 29 100.0 37 ............................. TGTATAGCTTCATATGTATTTATACACTCAACATTAA 37135 29 100.0 37 ............................. TTTGACAAAACGTATGGTTTAAATAAATCAGCTTAAG 37201 29 100.0 37 ............................. ATAACAACACATATTAAAATACATACTCCCCAAAAAA 37267 29 100.0 36 ............................. AATACAATGCCACTTCTCCCCTTGTCATTTATAATA 37332 29 93.1 37 ...............A.......A..... AAAGTTTATAGGAGTGTCAACACCAGTAGTATCTAAA 37398 28 82.8 0 ......C...........-.A..T....A | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 96.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ATTCATTTAATCTAAAATGTGAGAATATCTATTTATATCTATTTTTAATAACTGTATGTCCTAATCTTTCAGAAATTATTTTTATGTTGGTTACAGTTAGAAGAAGTAAGCTTGCATTTGCATGTCTTAATTCATGTATCTTTATACATAGAAGGTTATTAGTTTCTAATAGTTTTTTAAAGAATATATTTATTTTATTAAATTTGCTTGTTTAAGTTAACTCATTTTAATATAAATAATTATTTTTTTGTAAATTAAAGTGTATTTATTTTTATTAAATTATAAATTTACATAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAGAAACTTTGCAGTGTTCGTTTTTTTTGGAAAATTGTTTGTAGTTATTGAAATTACTGTTTTATAGAGGTTTTTTATAAAGTATCAAAAAACACTACTGGTCGCTCACTGCAATTTTAAGAGAATTATGTGATTTAAGGTATTGAAAATGCTCAATTTATTTTGGG # Right flank : ATCGAAACCACTAAATAACACTTACTCAAATAGTAGGTGTTTTTTTATACAAAAACTTAAGAAAGGAGAGTAATAATATGGCAATAATACAAACAGCTATTCGAATTTTCGATGGAATTAAATTTTAAATATAAATATACATTAGGAATTGTTAATAGTAGTGAAAATACCTACTAAAGTGAAGATACTTATCTTTATGCTAATACAAAGAAGCTTAAAGCTTTTATCAGAATTAAAGAATCTAAAAGTATTATAAATAGTAAAACTTCTAATTTAGATACGAAGCTAGAGGAATTAAATAATGAACTGTTAAATGCTATATAAAATATCTAAAAGAATTAAAAAAGAGTGCAAAAGCACTCCAATTGTGAGAAATATATACATAAAATCATTATTACAACAATGAAAAATGTACATATTAAGAGACATTTTGTATTTTTTTATGATAACACTTAATTTAAAATAAATGTTTATCATAGCAATAAAAAAGAAAAAGGGAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 24580-25264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWE010000019.1 Clostridioides sp. ES-S-0077-01 CD-ESS007701gDNAQiagen-xx-EN-USA-2019-092-PK_135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 24580 29 100.0 36 ............................. TTTCTTTAGACCACATTTTTTCATTATAGTAGTATT 24645 29 100.0 37 ............................. CTGTACAAGCTTTCAAAACTGTTTAAATTTATAACTC 24711 29 100.0 37 ............................. CGTGCTGAACTTAAAATAATGATGCTATTTTGGGACA 24777 29 100.0 36 ............................. CCTTTAAAAAATTTTTCGTCTGCATGTAAAAATAGC 24842 29 100.0 37 ............................. ACTATCTAGCTATAGTAAGTAACAGTAATCTTTTACT 24908 29 100.0 38 ............................. TAGTAAAAGTATTTCTATCAACATTATTTCCAAACCCT 24975 29 100.0 36 ............................. GAAGATGTTAAATATGATGACTATATTCTTCAAAGA 25040 29 100.0 37 ............................. TCTAGTATGTCTTGTACTGATGCCAAGTCATCATTAG 25106 29 100.0 36 ............................. AATGACCAGTACAAATGCGAGGTTGGCGATGATAAA 25171 29 100.0 36 ............................. CTTACTGCATCAAAACTATCATTCTCAGTTATGTTA 25236 29 72.4 0 .............CGTA.CA...C....T | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAAGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAACAAGGTTAGAAAAATACTTAGAAAATATTTGACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGTGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGCATATGATAACTGTTATCAATTGCACTACTACTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGAATGCAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : TAAAATACACTTACCTATAAATATGACAAAAATCAATACAAAAATGGGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGGAAAATAGCTATAATGCCGTTAAAAATGAATATATACCTATATCAGATACATTTGTGTATAATGATGGAGAGGAAATAAAAGGATTTATAAGCATAATAGATAAAAACTTTATAGGAGCTTTATTTATAAACCCAAACTACCAAAACTTAGGTATAGGAGGTAAATTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTATTCTACAATAAAAAAGGTTTTAATATATTAAAAGAGCAAATAAATGAGGACTCAGGATTTAAAGAATATATAATGGAATATAGTAAATAATATGAGCTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 266243-266016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWE010000003.1 Clostridioides sp. ES-S-0077-01 CD-ESS007701gDNAQiagen-xx-EN-USA-2019-092-PK_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 266242 29 100.0 37 ............................. ACAAATGAATCTGCAAATATAGTTGTACTACTTAATG 266176 29 100.0 38 ............................. AGATATTTCAAGCTCTTTTGCACTTTGAGATAAGTTAC 266109 29 100.0 36 ............................. ACTTTTCTAATTTTTTTATATTTCTTTCTAGAGTAG 266044 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GACAAAACCATTTTTTAGGTTTAATTGACAGTCAGTTTTTTTATGTAAATAATATTTTGCTTAAATTGTCAGAAGTCTTTTTATCCGTTTCTTCTAAATGAGAATACCTATACATAGTTATTTTTATTTAAGATAACTTTTTGTTGTGCGTATATGTTTTACAGAAAAGAAGATAATTATAATTATATTAAATATTTTAGAAACCTAAAAAGAAAAAGGTATTATTGGAATAGAGAGTATAGTTAAGCATTTACAAACATATAGATGCTCTTACTTTGCTAAATTATCCCATTTTTATTTTATAATGTGAGTTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGAGCGATTTTTGAGATAAAGTAGGGCATAACAGTTGAAATATAAAGCTTTGAGAGCATATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAATTTAAGAGGATGGTATATGTATAAGCGTTGGAAATACTCAATTTATTTTGGG # Right flank : GTTTTACTGCTGGATAATAGAAGTTTCTTCTCATTGAATAAAGATTTAATCACTTTATATTTATCTTAATTCTGGGATAGTTTAATTATTATTCTCTAGTTGTAATTTGTGTTTCATGATTTTAAAATTTTCAATTCCAATTTTATCTCGTCTAATTGAGTTAACTTACCTTTTTGATTTTCTAATCAATCCATTTTTCTTTATATTTAAGAATCCATATTCTAATTTTATTGTATAGAACAAAATGTTTTTCTGCTATTAAATTAAACTCTTTAGAAAAATGTAATTCAACTGTTTTGATTTTTTATTCTAATGATACCTTAATTTTGGACATAATAAAACTCTACTAGAGTTAGATAGTTTTACATATTTTAACTGTATCTTAAAGGGATATAATTCAATAAAAGGAGTGCTTTTGAACAAACTTTTTTTATCTTTTTTATCTTCTACAGATTTAAGTATATCACCTGTCTGGCACTATAGAGCTTTGCAAATTTCGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3480-3125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWE010000031.1 Clostridioides sp. ES-S-0077-01 CD-ESS007701gDNAQiagen-xx-EN-USA-2019-092-PK_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3479 29 100.0 36 ............................. AATTAATGTTAACGTCGCATAATCATGTTATTATGC 3414 29 100.0 37 ............................. TTGTTTGTGTTCCAAAGATATATTAATCCAGCTGACA 3348 29 100.0 36 ............................. TTTCCTATCTCATTTGCAAAACTATTTATAGATTTG 3283 29 100.0 36 ............................. AACATTGTTGAAGTTTTTGTCATTGCAGTTTCAAAT 3218 29 100.0 36 ............................. TGAGCCATTAAGTTATAACTTTCTTCTGCTGTCATT 3153 29 79.3 0 ......T..C......G....T.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.5 36 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AGATACAAGGTGAGAAGAAGAATTATCATGTAGTATATAAGATTGAGTAAATTCTATTGTATTAAATAATTTAGTTTAGTTTATTTTTGAGGGGGATTGATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGGTAGGAAATCAGAAGAAAAAGAGAATAAATAATATAGATAAAGCACTTGGATATTCTGTTGTTTCAAGTGCTTTGTCTGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGAGCGATTTTTCTACTCAAGTATGGTTTAACAATTGGAATACAAGGCATTGAGAACATATGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTATATATGTGTAGGTATTGAAAATGCTAAGTCTATTTTGGG # Right flank : TAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTTTAATGAAAGAATGTGATTATAATGTAAAAAGTAATAAATAGGTAAAATATGTAAGAATTATGTGTTATAATATTTTTAGCAAGAAGATGCAACCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGTGATATATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTACTATAATAGTTTGCTTAACTAGTAAATTAATTATAGTCAAAAAAACAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTATGCTTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAATAAAAAAAATTTAACATTAATTATTGTAAGTTTTGACATTAATTAATGTTAAAATTTATAAGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 16816-17371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWE010000008.1 Clostridioides sp. ES-S-0077-01 CD-ESS007701gDNAQiagen-xx-EN-USA-2019-092-PK_124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 16816 29 100.0 36 ............................. TGATATAATGGTTTTAAATATTCAACATATTTTAGG 16881 29 100.0 36 ............................. AGCAAATGATAAAAGCAATTCCTGACGTTCTTAACT 16946 29 100.0 37 ............................. ATTTTAACAGCAGAAGGATTATTCGCTTTTATCAATC 17012 29 100.0 37 ............................. TTATCATATTGTTTATATTTTGCAACTTGATAACTTT 17078 29 100.0 39 ............................. AAAGGCAAAAAACGATGGAGTTCTTCTCGAAATTTAAAG 17146 29 100.0 37 ............................. AAAGGTCGAAAAAGATGGAGTTCATCACAAAATTTAG 17212 29 100.0 36 ............................. ACAGATGTAATTAAAAAAATATCTTCTGAGGAAATA 17277 29 82.8 37 ......T........AG...T.......G TTGTCAATATCTTCATTAAACTTTCTTTGTTGCTCAC 17343 29 79.3 0 A.....T.........G....C.TA.... | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 95.8 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AAGGTGAGAAGAAGAATTATCATGTAGTATATAAGATTGAGTAAATTCTATTGTATTAAATAATATATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGTGTGAAAGTTTACTTGATAATATGTATATTGAAAAGAGAAAAGAAGAATATAGAATTAAACTTTTGAAAATAAGAGAAACAGATATAGATATATATAATAAGATAGAAAGTATAGTATATAAACTTTCTGAGAAAAAACAAGAGAGAAAATAAGTAAAATAATATAAATAAAGCACTTGGATATTCTATTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAAATAAGGGTTTTGCAGTGAGCGATTTTTCTACTCAAGTATGGTTTAACAATTGGAATACAAGGCATTGAGAACATATGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTTTATGTGTGTAGGTACTGGAAATTCTAAGTTTATTTTGGG # Right flank : TTAAAAATACTAAAAACACTTACTCAGGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTACGGATATAGTATAATATTGTTAGAGAATATAATTTAGGGGGATGTTATATTATGAAGAAAAAAGTATGTTTTTTGTTTTCTATTCTTATAGTTATCTGTTTAGCTATTGTAGGATGTTCTAATTCAGAAAGTCCAGAGGATAGTAGTAAAAATAATGAAACAAAAAAAGAAGAAAAAAAGGATAAAGAAGTAGTCATAGGAGAGAAAATTATTTCAGACAAAATGGAAATCACTATTAATAATATTGAATTCTCTTATGATGTGTTACCAAAAGTTAAGGAAAGTTTCTATACACATTATCCTGCTGAGTCAGGTAAAGTATATATTGATATTGCTGCTGATATAAAAAACACTCAAAAACAAGAGTTAAATTGTTCAGATTTACTAACCATTGAAGCAGATTATAATGATGGGTATAAATATTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 84136-83513 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWE010000010.1 Clostridioides sp. ES-S-0077-01 CD-ESS007701gDNAQiagen-xx-EN-USA-2019-092-PK_126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 84135 29 100.0 37 ............................. GTTGCTGTTGCTATTGTCTTTGCTAATTCTTGCATCT 84069 29 100.0 37 ............................. CAAACTTCTACATGGGGACTTGAATTTTGGGAAAATA 84003 29 100.0 37 ............................. TCTAATAAAAACCCTATGTTGGTTGTCATTTCTGCTT 83937 29 100.0 36 ............................. CTTGCATATCGAGGTCAAGGAATTTTAGTGATGACC 83872 29 100.0 38 ............................. CTGACTCATTTTTTGATGTTAGTGGTAGCAAAAATTAT 83805 29 100.0 38 ............................. TATGAACTAGAAGATTCAGATATTTTATCTGATAATTC 83738 29 100.0 36 ............................. ATTTCTGACAATGAAATAGATAGGTGTATAGAAGAA 83673 29 100.0 37 ............................. TTTTCATTTTGCAATGATACATTAGCGAGCAATGAAA 83607 29 100.0 37 ............................. CAGGAGAAGCAAATGCCGAAATAAATGGATTTGGCGA 83541 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 99.7 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATGAAGTACACATAGCATATGGATTCCACGATTTAAAGGGTGCAGAGCTACAAAATAGTTATGGAGTTATGAGATAAGCTCAATTATTAAAAGTAATGCTTACATCAGAAAAATATGTAAGCATTATATATTATAATCATTTTAGCAAGGAAAATAAAATTGAAAAGCTAAGGGTGATTTTATCATATAAACGCCAAAATAAATAATTTTTAAATTATACTCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATTTCCTTGTTTTTATTATATAATAAATTTGTATAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATTTTTCTAGTAAAGTATGGTTTAACAGTTGAAATATAAGGAATTGAGAGCATATGATAAGTGTTATCAGTTGCACTATTGACCGCTCACTGCAAATTTTAGAGAGTTGTATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTTATTATTAAAAGTAACATATTTATTATTAGCTTTATCTACTCTTTTAATAATAATTTATTTAAAATAGATTTCATATAAGAGTTATAGAAAAGATACTGTATAAATTCTTACTTTTTAGAGAAATAAATCTAAAAATAACAGAAAGTAAAAAAGAAATATATTTTGATGAGTTTTTTAGCAACAGTTTATTTTAAATTGTAGATAAAACTAAAAAGGGTTCTCTAGAAAACAAAATCTATCTAATTATACTTACTTACCAATACCATCACTTGATGTAAGCAAGATTCTACCACATTTTCTCCGTACTCCAGTATAAAATCATCTAATTGTGTATCTATAAAATCACAATAATCATATGAACTACCGATATAAGCAGTCAACATATGTGTACATCTATCCATTTTATCTCTAAACATATATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAATACATCTTTTTGGCAACTGGCTGACATAACTCATAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //