Array 1 11421-8831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYG010000002.1 Deinococcus sp. 6GRE01 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11420 29 100.0 32 ............................. AGCCGCTGGGACGGTTTGAGGGCCGCGCCCAG 11359 29 100.0 32 ............................. GCCCCGTTGGACCTGTTGACGCACGCCGGGGT 11298 29 100.0 32 ............................. TCATGGTGCTGGCATCCTTGCAGATGTGGTGT 11237 29 100.0 32 ............................. ACCCCGTAACGGCGGTGCTGTGGTTCCTCGGC 11176 29 100.0 32 ............................. CGTACCGACCGACTGACGGCAGGGCTTGACAA 11115 29 100.0 32 ............................. AGCGGGGACGCCCTGCGCTGGATTGAGTGGGG 11054 29 100.0 32 ............................. GGCGCGAGTCCTACCAGCGGGGACGGGCTGTT 10993 29 100.0 32 ............................. CGCGCGCCCATCCCAGTGATGCCCACGCCCAC 10932 29 100.0 32 ............................. CCCTCCCCAATCGAGGCCCGCGCCCTGAGCCG 10871 29 100.0 32 ............................. GCCATGACGGCGGACGTGGCGACCCTGGACGG 10810 29 100.0 32 ............................. TTCCGGGACGGGGACCGGGGCCCCAACGTGGA 10749 29 100.0 32 ............................. TCGACCGGGTCGGGGAGCGGGTCCAGGCGGTG 10688 29 100.0 32 ............................. TCCCCAGTAGGTGGACGTAAGACCCGCCATTC 10627 29 100.0 32 ............................. CGGAGCACGGGACTGGCGCCCGCGGCGTGCCC 10566 29 100.0 32 ............................. CTGGCCGACGAGATCATGGCCGCCCTGACCGC 10505 29 100.0 32 ............................. CCTTGTTCAGCAACAACGCCGCCGCGCTGGCC 10444 29 100.0 32 ............................. GCGGCCCGCTGATGCCCGCCCCGACGCTCGCG 10383 29 100.0 32 ............................. GAGGAGGCTGAGTTGGCTCTGGGCGTGCGAAA 10322 29 100.0 32 ............................. CAGCGCGGGCGCGTCGAGGTCAGCGAGCGGGC 10261 29 100.0 32 ............................. AAATACGGGGATCAGGTCGAAGACAGCAACGG 10200 29 100.0 32 ............................. TACCCGTTCGTGATCACCAGCCCCTTGATGTC 10139 29 100.0 32 ............................. TCCGTGCCCCACCCAGTCCTCACTGAGTCAGT 10078 29 100.0 32 ............................. ATGGACCCGTGCGGCGGCTGCTGATTATCCCG 10017 29 100.0 32 ............................. GCAGAGAGCGGCATGGAGGTGGAGTTCCAGGC 9956 29 100.0 32 ............................. ACAGTTCCGACACGCGGCCGCGCCCCACCGGG 9895 29 100.0 32 ............................. CGTTCGAGGTGCTGCTCGATCACATGGACGTG 9834 29 100.0 32 ............................. TGCAGGCCGCGCTGAACACGTCCCGTCACCAC 9773 29 100.0 32 ............................. GGACCAGGGCAGACCGCCCGGACCTGGGAGAA 9712 29 100.0 31 ............................. GCCAGTGAAGTTGTGAGATGCAGGTGTTCCA 9652 29 100.0 32 ............................. AGGCCAGTGAGGAGAGACAAAAACAATGCGGC 9591 29 100.0 32 ............................. GTGGCGTGGACGACGTGAACACCCGGTACACG 9530 29 100.0 32 ............................. CAAACCGGGCGCACCTGCGTGAGCGGAAGAGG 9469 29 100.0 32 ............................. CCGGGCTGCAGTCGGGGGCGGGCCTGATCGGC 9408 29 100.0 32 ............................. TGATCGAAGATCTCCACCGCGAACGAGTGCGG 9347 29 100.0 32 ............................. GCGCCGCCGGACTGCTGCCCAGCCGCCTCGGC 9286 29 100.0 32 ............................. GGGGGGTGAAGGTCAGCGGCGCGCGAACGACA 9225 29 100.0 32 ............................. CTCCCCAGCTGCGGCCACCCCGACGAACCCAA 9164 29 100.0 32 ............................. AGTGTTCTGGACGGTGTTCTGGATGGTGTTCC 9103 29 100.0 32 ............................. GTGGCGAGAGCGCCGGCCGTGGCTTCCCGCTG 9042 29 96.6 32 ............................T CAACGGCGGCACTCTCCTGGCGGCGCAGGCCG 8981 29 100.0 32 ............................. TTCCACGAACGGACGCCCTCGCAGCAACCCGC 8920 29 100.0 32 ............................. CAGATCCTCTCGCGCACGGGTATGGCCGTGTC 8859 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.9 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CACGAACGCCGCGACAGACGACCTTGCCGCCGAAACCCCCCGCTTCGGCACCCGCCTGGGCGACGACAGCCTTCGCCTCGTCCCCATCTACCGCAACGGCGCCGACTACCTCGACGCGAAAGGGACAGTGGCCGCGCAGATCACCACCCTCCAGAAAAACGACTGGGACACCGCCCGCGCCATCTACCGCCGCAGCCTCCAGGTGTCGCGCCATGACCTCGTCAGGCACTACCGCGACCACCCCACCCGCCGGGGCACGGAACACAACGGCTGGGCTGCCCACCCACTCCTGCGAGACGCCGAACCCCTCATCCTGACTGGCAATCAGACGGTCATCGGCAAGACCCGCGTGGCCCTCGACCCCGAACTCGGCCTCACCTACGAGCGCATAGAATGACCGCAGGCACCCGCCCGCGCCGCATGAAAATGTAAGCTGAGACCGAGGGGGGAGAGGAGACCTCCCGCCCCCCTTACTCCCCCGGAGTGCGTGTTCCTGAAGT # Right flank : TACCTTCAGGGCGGCCCGATTTCTCTCGCCGTCAGGCGGGCGTGGGTCGCCGCGCGGCGTCCCCGAAGGCCAGGTCCGCGTTGATCGCTGCGGCTGCGCGCGCTCCGCTGGCGGCGGCCAGGACGACTTGCTGCTCGCCGATCATGTCGCCCGCCGCGTACACGCCCGGCACGCTGGTCAGTCCGGTTTCCGGCGTGACCTTCAGCAGGACGCCCGCCAGGGGGCCGCGCTCAATGCGGGCGCAGCCGAGCTGATCGGGAATCGTGGAGCGTTGCGCCTGCCCGGGCGTGACGAACAGCGCGTCGCGGTCCATTGACGGGCCGTTCTCGAAGGTGACGTGCCGCCCGTCCCAGCCGGTGACGGGCCGCTCGTCGATGCGGACGCCCAGGTGCGCGAGGTTGGCGCGTTGGTCGGCGCTGAGGTGGTCGGGGCCGTGCGTGAGGAGCGTCAGGTGCGGCGTCCACTGCCGCAGCAGGACGCCGCGGTGGTAGGCCATGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24474-26759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYG010000002.1 Deinococcus sp. 6GRE01 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24474 29 100.0 32 ............................. AGTGCCGATCTCTGACGCTGGGGCGCGATTGG 24535 29 100.0 32 ............................. AACGCCCAGCTCTGCGCGGGGCTGTAGTCGAG 24596 29 100.0 32 ............................. TTCGGCGCGGGCCTTCTGAGCCTCAGTGATGA 24657 29 100.0 32 ............................. ACGGGGACCAACTGGGCGATGTGCCCGCGAAT 24718 29 100.0 32 ............................. GCAGCGGGGCGGAGGGTGAGTTCACGCCCGGC 24779 29 100.0 32 ............................. CGGCGGGGTACGTCACGCGACGGCAGACCCGG 24840 29 100.0 32 ............................. ACGCCGTTCCACCCGCAGTGGCAGACGCTCCA 24901 29 100.0 32 ............................. GCGGGCAGGTTCAGGACGCGCCACTTGAGGCC 24962 29 100.0 32 ............................. GCGTGCCGGACTCTGATCCGCGAATACCTGGA 25023 29 100.0 32 ............................. CCGCCGTGCGTGACCTGATCGCCGCAGAGTGC 25084 29 100.0 32 ............................. CCGCCGTGCGTGACCTGATCGCCGCAGAGTGC 25145 29 100.0 32 ............................. GTGCCCGTGAAGGCAAGACGGCGGTACTGGAC 25206 29 100.0 32 ............................. TCGTCGTCTCCGATGACGATGCCCTTGATGGC 25267 29 100.0 32 ............................. CAGGCGGCAGAGCAGGGCGGGCAGCGCGCCGG 25328 29 100.0 32 ............................. CCGACGATCATCACGGCCAACCTGGACGCCAG 25389 29 100.0 32 ............................. ACTAAAAACCTCTCCCGCGCTGACGCGCAGGG 25450 29 100.0 32 ............................. CCTGATCGGCGTAGCGGACTCGGAAACCTTTG 25511 29 100.0 32 ............................. GCGACTGCCGGGAACATCGGGGCGGGCATCGC 25572 29 100.0 32 ............................. ACCGGCGGGCAGATCCACACGAAATCAGCCGA 25633 29 100.0 32 ............................. GGCTCGTGATCGTCGATGACAGCCTCACCTGG 25694 29 100.0 32 ............................. GCGCGGGCGGCCGAACTGGCGGCCCTGCTCAC 25755 29 100.0 32 ............................. TAGCTGCTCGCCCCGGCCACCCTGGCGTGCAC 25816 29 100.0 32 ............................. ATTACGCCAACGTCGTCTCGCAGCTTGTCACC 25877 29 100.0 32 ............................. TAATGCAGGTGGGCGCAATTCTGCTAGCCCTG 25938 29 100.0 32 ............................. GGTATGGTGAGTCATGTTAATTGGCTACGCGC 25999 29 100.0 32 ............................. GTCAAGAAGGCCGACGTGCGCGCGGCAGAGCG 26060 29 100.0 32 ............................. TTCGTGCAGCGCCTCCCCCACGCCGGTCAGGC 26121 29 100.0 32 ............................. CACTGACGCTCAGCGCCCCACCCTCAACTGAC 26182 29 100.0 32 ............................. CCGCCAGCTGATCCACCCGGCCACCCGCGCCG 26243 29 100.0 32 ............................. CCCCGCACAGTGGCGGGGCGGGGCGGGGAATG 26304 29 100.0 32 ............................. CGCCTGCGGAACCCGATCGTCACCCGCGCCGC 26365 29 100.0 32 ............................. AGCGGGTGTTATCGGAGATTCTGAGGCGGGAG 26426 29 100.0 32 ............................. CGCACCGCTGCACCCCGCATGAGGCGCACGCT 26487 29 100.0 32 ............................. TGCTGCTGCCGCGCGGGCAGAATCTGGTGATC 26548 29 100.0 32 ............................. GCCCTCGGAGCCACCCAGTGACCCGGCCCCCG 26609 29 100.0 32 ............................. CTGGCGAACGACCGCGCGAACCGCCTAGCGGC 26670 29 100.0 32 ............................. GTCGCGTTGCACGGTGCCCCGTACGTTCAGGC 26731 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CCACCACCTCCTCGGCGGCGACCAGAACGACCCCGAACCCACCGCCCCCGGCGACCTCTGGGATCCCGAAGGCGACGTCCAGGGCGGTATCAACCACGCATGATCGTCATGACCCTCGAAGCCGTCCCACCCAGCCTGCGCGGCGAACTCAGCCGCTGGCTGATCGAAGTGCAACCCGGCGTGTACGTCGGCAACACCACCGCACTCGTCCGCGACCTCCTCTGGGATAAGGTCGTGCAGTACGCCCGCACCGGCCGCTGCACCCAGCTGTACCGCGCGAATAACGAACAGGGCTTCGCCATCCGCCTGCACGGCGACCCGCGCCGCACCCTCGTCACCCTCGACGGCTTCCAACTGGTTGCTGTTCGCAACGCCCGTCATGCAGAATTGCAGGGGGAATACGACCCTCCCGAGGACGATGACAAACTGTAAGCCGAATCCGACCCCAGCGAAGAGACCTCTCGGGGTCACGCGCCCGTTCCACCTCGTGTTCCTGAAGT # Right flank : GCGACCACCACTGAAAAAGGTTCCGCGTCTGTGATTAGCGATCGCTCGGGTGCCCGGCTTCCGGCCGGGCACTCCTGCCGTTACCATGCTGTGCATGAGCACTGGGGCGACTGAGAAGGATCTCTTCGAGATCATCCGTCGTCAGTCCGAGCAGATCGACCAGTTGATCGCCGAGAACAAAGCCCTCAAAGCGGAAATCGCCCGCCTGAAGAAGCGCATCGAGGAACTCGAACGGCGGGAACGCAAGTACGCCGCCCCCTTCAGCCGGGAGAAGCGCACCTCCGATCCCAAATCACCAGGACGCCGTCCTGGTGAAGGTACCTTCGCCCACAAGGCCCCACCCACGCCAGAGCAGATCACGGCCACCGTGGAAGTCGACACGCCCAACACCTGTCCTCGATGTGGGTTCACGGGCCCGCTGATCTTCACCCGTCAGGACAAGGCCTGGGTCACGGAACTCGTCCCCCAGAACGCCATGCAGGTCACCGAGTACCACGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 28317-29443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYG010000002.1 Deinococcus sp. 6GRE01 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28317 29 100.0 32 ............................. CCTGCATGGGCCGTCGCGCTGAAGCGGCGGCG 28378 29 100.0 32 ............................. ACCAGCTGGACGCCGAATGGCGCCCGGACGCT 28439 29 100.0 32 ............................. GTGCTTGACCTGTTCAGGCAGTGGCACGCTAA 28500 29 100.0 32 ............................. ACCCCGAGGCTACCGCCCGCCTGAAGGAACTG 28561 29 100.0 32 ............................. ATAGACAGTGATTTGGGCCGGTCATACACATT 28622 29 100.0 32 ............................. GCTGCCCAGGCTGCGGCGTACATGGGGTCGGG 28683 29 100.0 32 ............................. TCGAGTGCCGGGGGCGGCTCGATGCTGGGTTT 28744 29 100.0 32 ............................. CAGACGCGCCGCATCCCCGCGAACCGCACCGC 28805 29 100.0 32 ............................. AGCCACGGGACCATGCTGGTCATGCGCGGACA 28866 29 100.0 32 ............................. CAATCGACACGAAGGGGCACGCGCGGTTCATT 28927 29 100.0 32 ............................. GCGACTGCCCCCTCTGCCTCAAGCACGGCCGT 28988 29 100.0 32 ............................. CCCGGCAGGCGCATGACGCGGCTCAGGCCTTT 29049 29 100.0 32 ............................. CCGCCGCCACCCGCAGTGACACCCCCCACTGC 29110 29 100.0 32 ............................. CGTCCGGCACCGTGGCGAAATTCGCGGACCGG 29171 29 96.6 32 ......................C...... TAGAACCCGGCGACCCGCTGACCTACGTGGAT 29232 29 100.0 32 ............................. AGGCATGGGCGGGTATCGCTCAGATCGTGGAC 29293 29 100.0 32 ............................. TTCGTGATGGTGGGGGACGCGTTGCTGATAAT 29354 29 100.0 32 ............................. GCGGACCGTGACCAGATAGCAGAGGCGTGTGA 29415 29 93.1 0 ........................T.T.. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : TCCAGCGGCAACCCGGGCGGGGAGAACTGTATGGGCAACGGGTCGCGCAGGTGTTCCGGGACGGCATCCGACTGCACCAGGACGTGACGAAGAGAGTGTGTACGCGAGAGGAGTACGCGCAGCAGGGTGAGGAACTCACCCTGCGTCTGGACGCCCTGCTGAATCGGGCACCACTGAAGTCGAAGGCGAACGAGCGACTCCGACTGGGAATCCTGAAGCAGAGCGTGCTGGACCGGTTGTGGCGGTTCCTGAAGGACCCGGACATTCCACCGACGAACAACGCGGCGGAACGGAGTCTGCGGACGGTGGTGATGGCGAGGAAGGTCTCGCAGTGCAGCAAGAACGCGGTGGGTGCGCAGACGTACATGCGGATCAAGTCCACCGTGGAGACCGCGCGGTTGCGCGGTCAGGACCCCGTCGCGGTCCTGACCGGCCTGATGCGCTGACTGGGCGCTTGACCTTTCGGCCGACCGCTAATCACAGACGGTTCCGCCGGGCTG # Right flank : GGTCGGTTGGGATGGGGGCGCGCGGTCTTGTGGACGGCACATGATCATGGCAAGGTCAAGGCCCGCCGCGCCGAACTCGAAGCGCGCCCCACGCCCCTGCGGGTGGATCCCACGCGCGTCACGCAGGTCGGCAAACGCATCGGCAGCGTCAAGTGGCTCGACACCCTTGACGACCGCGCCCAGAAGGACATGCAGAGGCGTGGCCCAACCGCATGCCCGACAGTGTCCGCAGGGCCATGAACCTTCCGGACTGACGTGAGTGCGCCGCTGCCAGGCAACTGCCGACGCGTGTCCCTGGCAGCGGCCGCTCAAGCGAAGTGCCGCCCAGTGGACCACTTCGGCTGGAGTGTCATGCTCAAGCTTGAGAGGGAGGTCAGCAGGCTGCCCTCCCTCTCAGAGCTAATGGCGAGCCCGATACCCCCCGCCTTAGTCCTGATGACTTACTATCCAGATGTAAACAATGGTCAGAAGCGCGATTCCCGCGTAGATCACGCGCAGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5845-1586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYG010000001.1 Deinococcus sp. 6GRE01 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 5844 37 100.0 33 ..................................... GTACAACTGTTCCGCCAGCGCGAACATCAGGGC 5774 37 100.0 41 ..................................... ACCCGGGACCATGCAGGCCGCACAGCGCGGCGCGCGCCGCT 5696 37 100.0 36 ..................................... ACCCGTGCACCCGGCCGGCCGGTGTGGGCACCAGTT 5623 37 100.0 34 ..................................... TAACAAATCGTTGGATCAGTACATAAGGGAGAAT 5552 37 100.0 37 ..................................... ATCTCACGGGCACGCGTTTCGAGCTTGAAAGCAAAAT 5478 37 100.0 34 ..................................... AGTCGTTGAAGCGGGTGCTGCTGCCCAGGGCGGC 5407 37 100.0 44 ..................................... TCCAGCAGGTGCCCGGCGGTGATCGCGTCATCGACGCTGCCGTA 5326 37 100.0 35 ..................................... AGACAGTGTTATAGATAGAGCCAACAGGAGCCGCC 5254 37 100.0 35 ..................................... AGGCGGACCCGTACAACTCCAGCAGGCCACCGGCG 5182 37 100.0 36 ..................................... TGACCTACGGCCTGCGCGCCGAGGTGCTCTCGCGCC 5109 37 100.0 33 ..................................... TCACTGAGGTTGAGGGCCTGCTGCGCGTGCGCG 5039 37 100.0 36 ..................................... ACACGGATGCCGTTGCTGTCGCTGTTGTCTGTGGCG 4966 37 100.0 35 ..................................... ACGTGCATGCCGACGCTGTTCGGCGAATGGAGCCC 4894 37 100.0 36 ..................................... AGGTAGTGGTTATGCCCGGCCTCGAACCGCTTGCCG 4821 37 100.0 35 ..................................... ACGGTTGCGTGGGGCTGGGTGACCATCGGCACGGG 4749 37 100.0 35 ..................................... ACGTACCCGAGCTGCCCCACGATCTCGTCCTGTAC 4677 37 100.0 36 ..................................... TCCTGACCATGGACATGCGGCAGGGGGACGCGACAG 4604 37 100.0 36 ..................................... ACCTGGAGGGCCGCACCGACACCATCCCGTTCATGG 4531 37 100.0 36 ..................................... TCCACGACCAGCGCGCCGGGCCGCAGCGTGTGCTGC 4458 37 100.0 35 ..................................... TTGATGACGCGGTCCTCGTCGGCGATCATCGCGTC 4386 37 100.0 36 ..................................... CTGCGATTACGTGGAGCTCTCGGTCGCCGTGTACCG 4313 37 100.0 38 ..................................... ATGTAATCAAGTACGAACACTTCCAGCACGGGCGACAC 4238 37 100.0 35 ..................................... ATGTACACCGCGAACGCCACGCTCTCGCCCAGGCG 4166 37 100.0 35 ..................................... GCCACCGCTCCGGCCTACGCGCCGCTGTTCCCGGA 4094 37 100.0 36 ..................................... TTGATCCACGTCCGGTACGCCCCGGCCCCCATCCCG 4021 37 100.0 39 ..................................... AATGTACACGCCGCTTTCGCTGCTGCTGACGATGGTGTC 3945 37 100.0 36 ..................................... AGCAGCTGGCGGTAGTCGAACTTGAACTCCAGTTCG 3872 37 100.0 35 ..................................... CGGAGATGCCTTCAGGGAGCGCGTAGGCATCAGGG 3800 37 100.0 35 ..................................... ATGATGGTCAGGCCCGTCAGGAGCCAGCCGACCAG 3728 37 100.0 36 ..................................... AGGTTGATGGTCGCCGTGACGTTCGCGCGGCTGGGC 3655 37 100.0 36 ..................................... ATCACCATGCGTTCGCGCGTACCAACTGCGTACCAA 3582 37 100.0 36 ..................................... TCGATGCGGTGCTGCACCGTGAACCGGTCCAGGCCG 3509 37 100.0 35 ..................................... AGCATCTACATGCCCCGCTGGGCGTCCCGTCTGAC 3437 37 100.0 36 ..................................... AGCACGAAAGCCGAAGACGGCACGCACGAGGACTAC 3364 37 97.3 37 ..........................A.......... ACCAGCGCCTCATCGAGGCGCTTGCGCTCGCTGCGGC 3290 37 100.0 35 ..................................... ACGGGCCGCCTGACCTTCATGCGCGAGAGCGCCCG 3218 37 100.0 35 ..................................... AGTCGCTCTGCGCCCAGGAAGCGCATCATCAGGGC 3146 37 100.0 36 ..................................... CATCACCAACCCAGCCCACGCGGCAGCCCAGGCCGG 3073 37 100.0 35 ..................................... ACCGACCTCAGCGGCCCGCAGGAGTTCCGCCCGCT 3001 37 100.0 35 ..................................... CCAGATCACGTATGACCATCGGGAGCCGTTCGGGA 2929 37 100.0 37 ..................................... AAGCTGAAGAATCCTGAACCCTCGGAATCCTCCTCGT 2855 37 100.0 34 ..................................... TTGGCCTGGAGCTGGGTGAAGTTGCGGTTGATCT 2784 37 100.0 36 ..................................... CGAGTGGGACGGCAAGGGGGATGTGTGGCGCACGGA 2711 37 100.0 36 ..................................... ACCGCCAGTTATCTGTACGTCACGGAGTTTGCCGGG 2638 37 100.0 36 ..................................... TTGATCGAGAGCAGTAGCACGGGCGGCAGCGGCGTG 2565 37 100.0 35 ..................................... ACCGGGGCGGATAGTTTCTCCCTGACCTATAAGGA 2493 37 100.0 35 ..................................... AGCACGGCGGTGACTTCCCTGCCGCGTACAACGAG 2421 37 100.0 36 ..................................... ACGGGATTCTGGGACCACGCGGCCGTGATGCCTGCC 2348 37 100.0 36 ..................................... ACGACCCTCAAGCAACGGGCCACACACAGGAGCGAC 2275 37 100.0 36 ..................................... GACCAGGACAGCAAGATCAAGCAGCTCGAAGCGGAT 2202 37 100.0 37 ..................................... CCCTGACCCATGCGCCCGGCGTACTCGATTGCGGGCA 2128 37 100.0 35 ..................................... GACCAGGTCGCCGCGTTCGACCCGCAGGACCCCCG 2056 37 100.0 34 ..................................... CAGAGCGTCAGGTTGATGTAGCTGGCATAGCAGC 1985 37 100.0 34 ..................................... ACACCTGCGCCACCCTCTGGGATGGCAGGCCGCA 1914 37 100.0 35 ..................................... TCGACCGACCCGGCAACGTGGTTGAACGGCCGGGA 1842 37 100.0 38 ..................................... CTTGGCGTCGATGTCGGCTTTCGTGCTGATGGCGATCT 1767 37 100.0 35 ..................................... CCCAAGGGCCGCTGGGCAGCGTGTGGGACGCCGCG 1695 37 100.0 36 ..................................... CAGAGAAATACGCTGACGTGACCGGCATTAGCCTGG 1622 37 70.3 0 .............T..A.G...TGT.CC..T..GC.. | ========== ====== ====== ====== ===================================== ============================================ ================== 59 37 99.5 36 GCCACATCGACTTCCCCGAGCGATAGGGGACTGAAAC # Left flank : CCTGCTGGTTGAGGCGGAGCTGGGACTGAGCTGCCCCCACGGGTACTGGCACAGCAGCGTGACGCACGAGACTCATGTGGTGGCCTTCGACCGACGCCTGAGAAACCGTACGGCCAGCGCCATCGCGGCTGTCCGGACGTTGATCCGGGAGGAACGCTGCCCGGAGCCTACACGCCGGGTCGAGAAATGCCTGGAGTGCGAACTCCGCAACTTCTGCGGCGACACGCTGTGAACGTCGCAACCGCCCTGGTTGCTGGTCATGGCAGTTCATTTGCGGGCTGTGTGGCACGCGTTCTAAGGTGGTATCTGCTGGCGCTGAGGTGGCTGCGGCTGGGCTATGCAGCACAAAACGCGTCCTGTACGGCCCGCAAATCGTCCGGCGAGAACGCCGGAATTCGTTTTGCGACTTCTATGCACGCGATACACTGCACCCTGTACCAGCCGCAGCGCGCGCCTCATGACAATCCGACCAAAGACCGCCAGACAGCGTCATATACGCT # Right flank : GGACGGGATCAAAGCCGGGGAGGCGCTCCAGGACCCCCAGCCGATTGAACGCGTTACCGCGGTCACCATGACCCGTATTGCTGTTCACTGGAACATCCTCTTTCACCATTGCGGTGAACTTCGCACTTCTGGTGAACTCAGGCTGTGAGTACTCCATTCGACAGCGGGGACACTTGCCCAGGACTGGCCCACCTCTGGGTGGGCCACCATGCGCGCATGGAGGACCCCACATGCCCCGACCTCACCCCGACCCTGCGCGCCCTGCTGCCGAGCGGCACCCGCGTCATCCCCGCACCCAAAGCGGCCGACCTGCGATCCCCCGACCTGAGACGTCTGACCGTCACCCTGAGGCAGAGCGGAGCCAGTCCCGCGCAGAGCAGCCCGCTCGTGCCCCTGTTGCTCTGATCCCGGCCGTTCCCCGCCTGGACGGCGTGACGCCCCTGATCCTCGACGCAGACCTGCGTGGCCTGGATGGCCGCGTGCAGCTCGCTCTGCATCAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCACATCGACTTCCCCGAGCGATAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //