Array 1 194528-196202 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVI01000011.1 Salmonella enterica strain SEH-4 NODE_11_length_196422_cov_34.4425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194528 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 194589 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 194650 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 194711 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 194772 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 194833 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 194894 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 194955 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 195016 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 195077 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 195138 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 195199 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 195260 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 195321 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 195382 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 195443 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 195504 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 195565 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 195626 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 195687 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 195748 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 195809 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 195870 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 195931 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 195992 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 196053 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 196114 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 196175 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16595-18210 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXVI01000008.1 Salmonella enterica strain SEH-4 NODE_8_length_256761_cov_34.4272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16595 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16656 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16717 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16778 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 16839 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 16900 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 16961 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17022 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17083 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 17144 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17206 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17267 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 17328 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 17389 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 17450 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 17512 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 17573 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 17634 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 17695 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 17756 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 17817 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 17878 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 17939 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 18000 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 18061 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 18122 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 18183 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //