Array 1 106019-105058 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJXM01000005.1 Enterococcus faecalis strain EN19 NODE_5_length_213205_cov_31.4449, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 106018 37 97.3 29 ....................................G CCCGTAATCATCGAGGTGATGAAAAGTAT 105952 37 100.0 29 ..................................... CACACGCATGCAAGTGTACTGCTTGCTGC 105886 37 97.3 29 ....................................C TAACCAGATTTGAAGAAGTCTATAACCTT 105820 37 97.3 29 ....................................A TTGACCCATTCTTGATAATCAAGAATGGA 105754 37 100.0 29 ..................................... TTTTTTCAGTTGGTGTTTCAGGTACAATG 105688 37 100.0 29 ..................................... TCATATTGTGTTTCTGAAATGAAATAACT 105622 37 97.3 29 ......T.............................. GTTCAGTAATATCATAATCCCATTTAACT 105556 37 100.0 29 ..................................... TTATTTTTAACCCAGTCGGCTGCGTTTCC 105490 37 97.3 29 ....................................A TCTCTCATAATGGAATTCCTTATGCTGGA 105424 37 97.3 29 ....................................G TGCAACTGCAGCTTCTGATGCATTTCCCA 105358 37 100.0 29 ..................................... TTTTATTAATATCCTGCTCCATATCAACT 105292 37 100.0 29 ..................................... CCGCCTATGATTACATCGCCTAGAACGTT 105226 37 97.3 29 ....................................G AAAAGCAGTTCGAGCGGAAACTGCGACCA 105160 37 94.6 29 ....................G...............G ACTTACAAAAGACTGTGATTTACGTTATA 105094 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 15 37 98.2 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 151297-151487 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJXM01000008.1 Enterococcus faecalis strain EN19 NODE_8_length_188100_cov_36.3421, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================ ================== 151297 26 100.0 28 .......................... AAGGTGGTGATACAGGTATAACAACGCT 151351 26 92.3 28 ...G...................T.. AAGGAGGCAATACAGATACAACAATGTC 151405 26 100.0 28 .......................... GAAGCAGTGATACAGGTACAACCCCACC 151459 26 80.8 0 G.T....A....T.G........... | TA,C [151479,151482] ========== ====== ====== ====== ========================== ============================ ================== 4 26 93.3 28 ACCAGAACCAGGAGATAGTGGAACTG # Left flank : CAAAAAATTAATCAATATCAACCGTTTCTTCCCGATCTCAATCGAAGTGACGAAGCAGTTGTCTTTGCTAGAGAGCTTGATTATCAAATCGGAAAATCAATAATTGGCTCAGAAGAAAACAAGCAGTTAAAATCGTTATTCACAAAAATTGAGCTTTCCTTTGGAAAAGAGATAATGAATGATCCGAATAATGCACATTTGAAGAAGTTATCGCTATCACTCAACGAACCAAATAGGCAACCTACTCAATCACAAGAAACACCTAAAATACAATCAGCACCACAACGTTCAATAAAAATGCCATCAATGTAAAGGAGAAGAGAAATAATGAAGAAATTTATATTAAGTAGTTTGTTTAGTGCAACTTTATTAGTAGGAGGTGTGTCTCACACTGCTTTTGCGGAGGAAAATTTACCTAGTAATCCTACGACCCCACCAAGTGAAGAAGTGATTCTACCGTTTACTGAAGACAGTACAACCCCAAGTGATCCAGTTCTTCC # Right flank : GGCGATAGTGAGCCAAGCCAAGCAACGCCACCAAATACAGAGAATAGTAATGCAGGTAGTAGTGATACCAATAAACCAACTCCACCAAGTTCAGAAAATACCGACACTGGACATACAGGAACGACTCCACCTACAACTCATGTGGGAGTAAATTCAGACGGGACGATCAATTCATCGGGAAATGGAGCACAAATGACTCCTATTCAAACGAATGATGTGAATGAATTGACACACATTCCAACAGCTTCTACGCCAGTTGAAACCGATACGGGAGAAAAAATCGTTTCCGTTGTAGACGGTGTGGCATACAAACAAGCAAATGATGGGACGTTGACGCCTATAACGGCAGAAGTGAAGCAATTACCTAGTGGAAATATTACAGTCAAAGGATCAGATGGCCAATTAAAAGTTCTACCAAAAACAGGAACAAAACAAACAGTTATGATGACGGTATTAGGTAGTCTTCTCACGTTAGGTTCAGCTTTTGTTTGGTGGAAAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGAACCAGGAGATAGTGGAACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //