Array 1 158007-156399 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDJO01000001.1 Escherichia coli strain SC98 98...scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158006 29 100.0 32 ............................. ATGATCCAGCGCGGCGGCTCATATGAAACTGG 157945 29 100.0 32 ............................. TGCGTGTCGGGCTGATTCGTCAGCTTCTTGGT 157884 29 100.0 32 ............................. AACGACGCACAGGATATAATGCTTGGCCTGGG 157823 29 100.0 32 ............................. TGACCGCCGATACGTTTGCTGGCGCGGCAGAA 157762 29 100.0 32 ............................. GTTACCGCGACTCATGCGACGATAAAAAATAC 157701 29 100.0 32 ............................. GTGCCGCGACTCACCAGATAGAAATAACGCAA 157640 29 100.0 32 ............................. GCTACCCCATTTGCACGCTGAGTTTGATTTCT 157579 29 100.0 25 ............................. GAGTAACCACGGTGGCAAAAATATC Deletion [157526] 157525 29 79.3 32 AG.GGTN...................... GCTACCCCATTTGCACGCTGAGTTTGATTTCT 157464 29 100.0 32 ............................. GAGTAACCACGGTGGCAAAAATATCAGGGGTG 157403 29 100.0 32 ............................. CCACATCCAGCATTTGCTGAGGTGAAATCCAG 157342 29 100.0 32 ............................. TTAACTTCCTGCGTCTGCTTGGGGGAATGGCC 157281 29 100.0 32 ............................. TTAGCGTGTGATTTTCCGTGTTATAGGTTAGC 157220 29 100.0 32 ............................. GCGGGATTGTTCCGTTTGCCCGCGCCACCAGC 157159 29 100.0 32 ............................. GGGCCGACGGTCGCAGTGCTGGACCATTTCAA 157098 29 100.0 32 ............................. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 157037 29 93.1 32 ............T......A......... GAAATAGCTTTTGCTGATCATCACGGTTTATG 156976 29 100.0 32 ............................. CCACATCCAGCATTTGCTGAGGTGAAATCCAG 156915 29 100.0 32 ............................. TTAACTTCCTGCGTCTGCTTGGGGGAATGGCC 156854 29 100.0 32 ............................. TTAGCGTGTGATTTTCCGTGTTATAGGTTAGC 156793 29 100.0 32 ............................. GCGGGATTGTTCCGTTTGCCCGCGCCACCAGC 156732 29 100.0 32 ............................. GGGCCGACGGTCGCAGTGCTGGACCATTTCAA 156671 29 100.0 32 ............................. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 156610 29 93.1 32 ............T......A......... GAAATAGCTTTTGCTGATCATCACGGTTTAAC 156549 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 156488 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 156427 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGATGATCCAGCGCGGCGGCTCATATGAAACTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGTGTCGGGCTGATTCGTCAGCTTCTTGNAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185019-184075 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDJO01000001.1 Escherichia coli strain SC98 98...scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185018 29 100.0 32 ............................. TCTGGGCCGGATTCGATCCCGCGCGTACCGGA 184957 29 100.0 32 ............................. TACAATCCCGCATCGAAACTGAATACCCCGAT 184896 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 184835 29 100.0 32 ............................. ACACGGGGCAGATTGAGCAGGACTGCGACCTC 184774 29 100.0 32 ............................. GCAGCAGATTTACAAACAGATCGGAGATTACT 184713 29 100.0 32 ............................. CGCGGCCTGCGCTCGCGTAAAATCAGTTGCAG 184652 29 100.0 32 ............................. TCTGGGCCGGATTCGATCCCGCGCGTACCGGA 184591 29 100.0 32 ............................. TACAATCCCGCATCGAAACTGAATACCCCGAT 184530 29 100.0 32 ............................. TTGCCCAGGCTTTTGCGAAAATTTGTGATTTG 184469 29 100.0 32 ............................. ACACGGGGCAGATTGAGCAGGACTGCGACCTC 184408 29 100.0 32 ............................. GCAGCAGATTTACAAACAGATCGGAGATTACT 184347 29 100.0 32 ............................. CGCGGCCTGCGCTCGCGTAAAATCAGTTGCAG 184286 29 100.0 32 ............................. TCCGCGCAAGCCTATATAAACCAGATTGATCA 184225 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 184164 29 100.0 32 ............................. TGTAAAAGTCTTGGTTTTGGCGCATCATTTGT 184103 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAGTAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34878-35083 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDJO01000016.1 Escherichia coli strain SC98 98...scaffold16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34878 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 34938 28 100.0 32 ............................ GCTGTATTCGGCAAATGAAGTGGATGTTGATG 34998 28 96.4 32 ..................T......... TTCGTACTTAACGAACTGTTGCTCCTCTGCTG 35058 26 82.1 0 ........T..A........-A..-... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGTTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTATGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTGTAGGCTGGGGCGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAATGGTGCTGGAAGGTAAGAATAAAAAAGGGTGCCAGCAGGAAAATGAGATGATTTTGCTTTATTAACAACGAGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAGCTCGTACTTTCGTACGCGCTTTTCTTTAAATATGACGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGTGTTCGTGGTCTGTCCAACTGGCTGCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCTGGAGTGCAATATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTGAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGTGTTCGTGGTCTGTCCAACTGGCTGCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCTTGGAGTGCAATATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTGAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTT # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //