Array 1 1178535-1176062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019968.1 Dehalococcoides mccartyi strain KBVC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1178534 29 100.0 32 ............................. ATGGGGCGTGGTGACTTGACCGCTATCAAAGA 1178473 29 100.0 32 ............................. GCAAGCTGGCCGTTCTGGCTTCAATGCGAGCC 1178412 29 100.0 31 ............................. CAATATGCCAGACAACTCAAAGACGTCAAAC 1178352 29 100.0 32 ............................. AGTGGCATTATTAGTAGTCAACTCACTAGCTA 1178291 29 100.0 32 ............................. ACAGCCGAGATAAAAATCAGTCAAAAAGAATG 1178230 29 100.0 33 ............................. GACAAGGTGGACAAGCCCGAAAAAGCAGCTGAA 1178168 29 100.0 32 ............................. ACCACCCACCAGTACAGCCATATGATGGACGC 1178107 29 100.0 32 ............................. GTACTAATTGCGAGTCGTACTGTATTGAGGGG 1178046 29 100.0 32 ............................. GATCTGCAAACACCCCCTAGTGCCATATGATA 1177985 29 100.0 32 ............................. GAGCAACGGGGTATGTGCCTTGTGCGGGAGAA 1177924 29 100.0 32 ............................. GCTACAAAAAGGGTGCACCTCTAACCATTGGT 1177863 29 100.0 32 ............................. TTAGCATGGTTATCAAAGCCGGTTACCAAGTT 1177802 29 100.0 32 ............................. TACTAATTCTGGCTCATCATACACAACTATAA 1177741 29 100.0 32 ............................. TGGCGTTTAGACCATTTTCACGCTGTAGACCC 1177680 29 100.0 32 ............................. AATTCATCTGTTTCCATGCACCATAGCCAGTA 1177619 29 100.0 32 ............................. TAGCTATTTTTGTGGCAATATATAGGGGATAC 1177558 29 100.0 32 ............................. GTCTCTTCAGATGCCATTATGAGCGTTCAGGA 1177497 29 100.0 33 ............................. CCCTCAATCCTGCCTATACGGCCCAGACCGTAC 1177435 29 100.0 33 ............................. TGTCAGTTCCTTGTCTTCTTCAGTTTCACCAGG 1177373 29 100.0 32 ............................. GATAGCCATGAACTGTCCTAAATGTGGCTCCC 1177312 29 100.0 32 ............................. GCACCTGTACTGGCGGTACGCAATAGATGCAC 1177251 29 100.0 32 ............................. AACGCGGGCCAAGACGGGATATCCTCTACTGC 1177190 29 100.0 32 ............................. AAATCAAGGCCAGCGGTGATATGTCCAGAGAC 1177129 29 96.6 32 ............................T GGAACTACAGGATGGGTAGCGAAAAGACTAAA 1177068 29 100.0 32 ............................. GTGGTTATGAAAAACGCTTCGTTCTGGTGGAA 1177007 29 100.0 32 ............................. AGATGACCACCCGTTTATACGCACATCTGTCT 1176946 29 100.0 32 ............................. GCCTCTTTGGCTACTCGATGCTTGACTCCTAG 1176885 29 100.0 32 ............................. CCCTAGCGATGCGGCATATTTCAAAGAACAAA 1176824 29 100.0 32 ............................. TGATGCAATCATAGAACAACTAGCCAGAGAGT 1176763 29 100.0 32 ............................. TCTCTCCCAAACTAGCTTCTGAAATTGAAGGT 1176702 29 100.0 32 ............................. CTGGAAGGGAATTGACAAGACTTTTCCTATTG 1176641 29 100.0 33 ............................. GTCGCATTATTAGTAGTTAATTCACTAGCTGGT 1176579 29 100.0 32 ............................. TCCTCGGAAGCCTTACAGTATTCTCCCCAACC 1176518 29 100.0 32 ............................. CCTTATGTGAATGAATATTATATTACTGCGTG 1176457 29 100.0 33 ............................. GAGTAAATACTTAGTTCGGCAAGCCCTAGCGAT 1176395 29 100.0 33 ............................. TAGTTGACTATGTATTCGTGCATCTTAGCCCCA 1176333 29 100.0 32 ............................. ATAGGCGCCATGTGGGCACTATTTGCGGCAGT 1176272 29 100.0 31 ............................. TGCATCTCTACAGTTCCACAGCGTCCATTAT 1176212 29 100.0 32 ............................. CAGGGCGAGTTATGTGCTAATTGTCGGTTAGG 1176151 29 100.0 32 ............................. GTTAAATATCTCTAATAAAGGGAACGGAGGGG 1176090 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.9 32 GTATTCCCCACGCATGTGGGGGTGAACCG # Left flank : ACTATTCCAGTGGCGTTCAAGGTTGCAGCGGCCAATCCAACCGACCTTGAACGCCAGGTAAGAATTGAATGCCGGGAGGCCTTTTATGAATTCAAACTCCTTGAAAGGCTATTGCTGGATATTGCGGAGGTACTTGGTGTTAGTGATGATATTGGAGAAAGTCCCGACGAGTTTGAGGGGCGCATTGTCACGTTGGCTATTGGAACCGAAGACGGGAGTTTTTCTTGGGAATCCGAGCGCTCGGGTGAGGGATGAACTCTGGGAACGGGCGATAAATAAGACGAAAGAAAGCGGTGCTATCCTCCAGATTTGGACAGACCAGAACTCCCAAGGATTTTCTTCCCGCCAATATGGTGAGAGGGAGCGGACTTTTGTTGATTTTGAAGGGTTATATCTGGTAAAAATAGACAAGAATACCAGCACTATCAAAACGCAAAATTCTGACACTACAAACCCCTAATCAGGAATGACCTGTTTTAAGGTCAGCTTTGTTATTTTAG # Right flank : CTTTAGCTTTCGGATGAAAATGCCCGTGTAGCCTTGCTCGTAGGGTAGGCACTTAAAAAAAGAAGTGCTACGTTCATATATCTTGCCCTACCCTACCGTCCCCGTTCGTCTTCGTTCCTGTATCTCCCTTTTCTACTCCAGCCTAAAAATAGAAAAAGAAATTGAGATATTGCCTTATGGGCGGGTTTCCGCTCAGGTTTGTTTCTTACTTGCCTTTGTATCCCCGGATGATGTTCTCTATCAGTTTTTTTAAGGCTAAAACGATGGAAAGTAGAACGGCTATTGCGAGTATGCTACCAAAAAATCCCCCTATTCCTGCTGGTGACATATGGTTCTCTCCTCAAATTAGAAATAAATTGCCTAAAGAATAACCTTTCGGTTAGGTAAAAGCAATAAATGACAACAAATATATACAAGGTGGTGGATAAAATGGACAACAAAGATATAGCCCGTCTCTTTTCGTGGGTTTTGATGCAAGGTGGAACGCTTAAAGCGGTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //