Array 1 340108-341331 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBR01000007.1 Azospirillum lipoferum strain R1C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 340108 32 100.0 34 ................................ ATCAATGTTTGCGAATCCTCCATATTTTCGGCAA 340174 32 100.0 34 ................................ AGTGATCGGCTCGTGCATCCGGAAGCGGAGTGCT 340240 32 100.0 35 ................................ TATGCGGGCTGGTGCGGGACGTACTTGGTTCACGC 340307 32 100.0 35 ................................ CCGTGCGCTCCGTGATGCGGTCTACGCTGCGGCGG 340374 32 100.0 33 ................................ CGGCCCTCCGAGCAAGCGTGCGGCAGTTCGAGC 340439 32 100.0 33 ................................ CCGCGCCAGCTCCACCACAGCCGCGCCCAAGCC 340504 32 100.0 33 ................................ CCCCCGCTGCCGGTGTGCTGGGGGGTGCGGCGC 340569 32 100.0 35 ................................ AGCGGTGGAGTTGTCGCCGGACGAACTGACCGCTG 340636 32 100.0 35 ................................ CGTCCAAGTAGTGCCGGAGATGGCGTAGACCTTGA 340703 32 100.0 37 ................................ CTCGATCACACCCAGACCCGGCTGCTCGCCGACGGCG 340772 32 100.0 32 ................................ ATCGTGCAGGAGAACCTTCAGCGCGCGATCAA 340836 32 100.0 35 ................................ GTCGCGATGGACGCGCCGCTGCCGGCCGTCAACAG 340903 32 100.0 34 ................................ TGGTCGTTGATCGGGAACAGGATGGCCGACCAGC 340969 32 100.0 35 ................................ TTCTTGGTGTCCTGCCAGCTCTTGTTGTTGAGGGC 341036 32 100.0 33 ................................ CACCGCCTTCTCGGCGATCTCGGCGCGCTGCTC 341101 32 100.0 33 ................................ GCGAACAGACGAAATCTCTTCATGCTGAGGCGA 341166 32 100.0 36 ................................ TGCGCGCCATCGGCGAGGACTACGACAAGGCGACGC 341234 32 100.0 34 ................................ TACCGATTCGCTGGGAAGCAGAAGCGGCACACGA 341300 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 100.0 34 GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Left flank : GACGCTGCATCCGGAGGTTGGTTTATGGACTTTAACGGGGTCCTAAGCCTTTTGGTTAGTTTTTTATGAATCCAATAGATTCCCGTGACAATATTTGGACATGACCGGGAAGAAAAAATATGCCAAGTGATCAGGGGTTTCTGCGTGGATCGGCCTTGGGGTCTGGATGAAATGAATCAGGGACTTTGAGAAGAACAGCGCATCATTTGTAGTGAGTGCGCTCCGTGGCAGGCAACCTGGAATTTTGGTTTTTGAAGCCGGTTCCGGTTAGGATGTTCCCTGGAGCGCCGATCAACCGGAATTGCATGGCGTCGGCCTCGCGGCTTCCGGCCTGCGCGAACCTCAAGCGGACAGAAAAACCCTGGCTGGTTCGCGATGTTGTGGCATCAATGGGTTAAGCCTGCGGGACGCCGTTCACCGGCAAGGACGCGGACCGGTGGGACGGGGTTCGCGCCAGAGCGGGGATTGTGGGTTCTTGGACAAGTGGATAAGGATTGGCC # Right flank : CGTCTTCGACACAGTTTTCCTGCGCAACCTAGAGTCTGTCTGATTTAAGTAGGATCGTATCCTGCATGTCGGATATATGCGGCGCACTCGTGAGGCTGGAAGTGCTCCAGCAGGTTTCCGATGCGCCGCCATACGGCTTCGATCGTCCTTTCCTCGGCTTTCCGGACCAAGGTTTTGAGCTTTGCGAACATCATCTCGATGGGATTGAGATCAGGACTGTAGGGCGGCAGGAAGAGCAGATGGGCGCCGACATTCCGTATGGCGTTGCGCGCCGCGGCTCCTTTGTGACTGCCCAGGTTGTCGAGAACGACGACATCGCCCGGTGCCAGGGTGGGCACCAGGAATTGCTCGACCCAGGCCGTAAACATGGTCCCGTTGATCGGCCCATCCAGGACCAGAGGAGCCACGATCCTGTCGTGACGCAGGCCTGCCAGGAAAGTCAGCGTCTTCCAATGGCCGTGGGGAACTTTGGCGAGGTAAGGCTGGCCCTGCGCACACCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : NA // Array 2 342422-343050 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBR01000007.1 Azospirillum lipoferum strain R1C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 342422 32 100.0 36 ................................ GGCCCAAACACCGGATCGGTCAGCATGGGCGCGACC 342490 32 100.0 34 ................................ ACCGTGGTCAAGGACGTGGACCGGCTGTCCAACC 342556 32 100.0 34 ................................ GGCGAAACGGCGACGCAGTACGCCAAGCTCGCCG 342622 32 100.0 34 ................................ ACCCAGGCGACGGGCAACGTCGGCCGGGCCGGCA 342688 32 100.0 34 ................................ CTCCAAAGCTTGGAGCTTGGTGTCCATGTTGAGC 342754 32 100.0 34 ................................ TTGAAGATCGGGTCCTCGGGATCCTCTCCCGGCT 342820 32 96.9 33 ................A............... ACGTCCATCGACGTGGTGCGCTCGGATCGTCAG 342885 32 100.0 35 ................................ TGAGTTTCGCTGTGTAGGGATGCACGGCGCACACG 342952 32 100.0 35 ................................ GCACTGTCCTTCTGGATCGGCGTGTCGAAGTCGAG 343019 32 96.9 0 ...............A................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.4 34 GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Left flank : CGCGCTCGGAAGCGAGCCAGCTTCGTCCCATCCTGCTCCTTGGCCAGCAGCGTTTTTTTTGAAGCTGAGGCCCAACCGGCGCACGCATCGCCAGACGGTGTCCGGCGTCACCACTGTGCCGCGTTCCGCCAACTCCGCCGTCAGCGCCCGGATCGTCAGGTCGCCCTTCTCAGCCAGCCGCTCGCGCAGCCAATCCACCGCCTCCGGCCCCAGCACGAAGGGACGATGACCGCCCATCTTGCCCGGCTCAAGCCCTTGTCCGGCACGTTGCTTCTGACCGATCCGCACTGCCGTCGCAACTGAGACGCTGAACTGCTGCGCCACCGCGCGGGTCGTCAGGCCACTCGCCAACGCCGCCGCAATCCGCTCACGAAGATCCAGAGACAACGGACGTGCCATCAGGGTTGATCTCCCAAATCAGTCAACCCGTTGAATCACACATCCGCTCCCTCGGGAATCCCCATCTCCGATTCAGACACAAACAGACAGACTCTAGGAGC # Right flank : CGACCACCCCACCACCTTCACCAGAAGCTGGGGCGTGGTTGAAGGCAAGCGCCTTCCCCGAAGCTTCCCAGCACCGGCGCCGGTCATCCCGGCGCTGGTGCCCTTCGGGCCGGTCAGCGCCGCAGGCCGCGCCGTTCCATTTCCTCCTCCATCGCCCGGCGGTCGCGCTGCATCTGGCGCTGTTCGTCGACCAGCCGGTCGTACTGGTCGCGCAGGTCGCGGTCGGAGTAGCGGCGGTAGGGACCGGCGTTCGCGCTGCGGTCGTTGGAGGACCCCTCGTAGCGGCGGTCGTCGCGGGTCGCGCCGCGGTCTTGGGCGCCGCGGTCCTGGGCGTTGCGGTCCTGCGGGTAGGCGTCCGGGTTGACCGCCCGGTTCAACTGGTCGAGCGCGCCGCCCCAGCCGTTGTTCTGCGACTGGGCGGGAGCGGGCGACGACAGGGCAAGCAGGCCGGCGACGGCCAGCCCCAGGCAGGGTGCGATCTTGCGCATGCGGTGCACTCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 1395867-1398417 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBR01000005.1 Azospirillum lipoferum strain R1C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1395867 32 100.0 37 ................................ GTCACAGCGAAGAGGATTGCCCAACATGCAATGGCTC 1395936 32 100.0 33 ................................ GTCACAGTGTCGGTCAGTGTGCCGTTCAGGCCG 1396001 32 100.0 34 ................................ GAGATACGCCGTGATGTACACTGCGGGGGAAGCG 1396067 32 100.0 35 ................................ GATCCACATCCGCGACCATGTGACCGACGCAAGCC 1396134 32 100.0 36 ................................ CTGGCAATCGTCCAGACGGAAAGCAGCGGGTGGCCT 1396202 32 100.0 34 ................................ TTTGTCCGGCCTATCCCCTTCCCCAACCGACCGG 1396268 32 100.0 34 ................................ GCTAAGGAGGGGTTGCCATGGCGAAGGCGCAAGG 1396334 32 100.0 36 ................................ ACGCTTCCGGCTGACCGCCGGTCACTCGCGACGGTG 1396402 32 100.0 36 ................................ CTGGCAATCGTCCAGACGGAAAGCAGCGGGTGGCCT 1396470 32 100.0 34 ................................ TTTGTCCGGCCTATCCCCTTCCCCAACCGACCGG 1396536 32 100.0 34 ................................ GCTAAGGAGGGGTTGCCATGGCGAAGGCGCAAGG 1396602 32 100.0 36 ................................ ACGCTTCCGGCTGACCGCCGGTCACTCGCGACGGTG 1396670 32 100.0 36 ................................ CAGGTAGTATTGCTCCCGGTAGCAGAAGATGACGAC 1396738 32 100.0 33 ................................ AGCAAGCTGGAAGATGGCGTCAAGGATGCGCTC 1396803 32 100.0 35 ................................ ACGCCGTCGACGATGTCTCTGGCCAGCGTCGGGTG 1396870 32 100.0 34 ................................ TCGTACTCGTGGATCTTGCGGTCGAAGTCGGTGA 1396936 32 100.0 35 ................................ CGTGTCATCGGCGCGGAATTGAAAGCTCTTAAAGC 1397003 32 100.0 34 ................................ CGGGTCATGGGGCTTGGGCGGCCGGCGCAGTCTG 1397069 32 100.0 33 ................................ TTCTGGCTGCCCGACCCAACCAGCACGACAAAC 1397134 32 100.0 36 ................................ GTGCAGCCGGTCGCCTACACCGCCGCCCGTGCCGCC 1397202 32 100.0 32 ................................ GCCGTTGGGGAGCAGCCGCTCGGCCACTTCCT 1397266 32 100.0 34 ................................ GACGCCTCCTATGCCATCGCCCCGACGAAGGACG 1397332 32 100.0 32 ................................ GTCTTGGTGCGCACCGTTTCCAGTGTGGTCAG 1397396 32 100.0 34 ................................ AGCCGCCCTTCACCCCGGAGCGCTACACGGCAGC 1397462 32 100.0 37 ................................ AAGTTCGGTCATGGTGCGCTCCTCAGTTCACCGGCCA 1397531 32 100.0 34 ................................ GTCGTGGATGAGAAGGCCGAGTGCGTGACCTGCA 1397597 32 100.0 33 ................................ CAGGCCATCCATGCAATCGCCGTCAAGGATCAT 1397662 32 100.0 32 ................................ ATGATCCGCTTTCCCCAGCCGGGAAGTATTGC 1397726 32 100.0 35 ................................ ATGCTCTCTCCATGAGGTCTTGAGTTGCTGACGCT 1397793 32 100.0 35 ................................ AGCCAGCCACTCGCCGCAGTTGCGCGGAAGTGGAA 1397860 32 100.0 35 ................................ AAGGCCTGGGAAATACGACGAGCAAGTCCGCGCTC 1397927 32 100.0 34 ................................ TCGAAGGCGGCGATGGCGGCCGGCTGAAACTCGG 1397993 32 100.0 32 ................................ GGCGTGGAGCGCACAACCATCTGGCGATGGTC 1398057 32 100.0 33 ................................ GATTGACGCCGCCCTCCATCGGGCCCGGCGCTT 1398122 32 100.0 35 ................................ GACCTTGATCCGGCCAGCCCCGGATCCGCCTGCCC 1398189 32 100.0 33 ................................ TCGCCCCGGGCTTCCAGGGCCAGGACCGCGCCG 1398254 32 100.0 34 ................................ ACCTTGCCGATGACGAGCGTGGTCCACTCCAAGA 1398320 32 100.0 34 ................................ TGGCTGTCGGTGATCCCGGCCGGCCAGACGAGCT 1398386 32 93.8 0 ...........T.......T............ | ========== ====== ====== ====== ================================ ===================================== ================== 39 32 99.8 34 GTCGCCTCCCGCGCGGAGGCGTGGATTGAAAC # Left flank : CCTTCCTGTGGCGCTGACGCCATGCTGGTGCTGGTCTGCTACGACGTCTTCACCGACACCCCGGCCGGCCGCCGCCGCTTGCGCCGCGTGGCGCGAACCTGCCAGGATCATGGGGTGCGTGTGCAGTATTCGGTGTTCGAATGCACCGTCGATCCGGCCCAATGGACCGTGCTGCGTGCGTCCCTGATCGGTCTGATCGAACCGCGGACCGACAGCCTGCGTTTCTATCTTCTGGGTTCGCAGGCCCGTCACAAGGTGGAGCACATTGGCGTCCGGACGCCGACGGATCTCGACGAGCCGTTGATCCTGTAGGTGGAGACTTGCGCGAACCCCAAGCTCCCATGACTTCCCCTGGAGGGTTCGCGTCTCGCGCACATCGAGCGTTTTGAAGGGGTTGATGCTTGCCCCGGAGGCGGCGGGCCGCCAGCGCGCTGTTTTCCCGCCTCGTTCGCGGATTGGTTATGGTTTCTCGTTCACCGCCAATGGGTTATTCTGCGGGT # Right flank : CACCAGCTCGTGCGCCTGGTGCACGCCGTCGACGCCGTGTCGCCTCCCACGCGGGGGCTGAGAGGTCGTCGCTCCGCTCCACGAATGTCCGCAACCGAGGCGTCAATCCACCGCAAAGATCGGGGCCTGTTCGGGAAATGAAAAAGCCCAAGCAAACCAGTTGCTTGGGCTGAATTCAGTGGCGGAGGGAGAGGGACCCTCTGCCATGTTCGCCCTAACGCGTCGCGCCCGTTGGCTTTTCCAGCGACCGCCACGCCCGGAGTCCCGGACTGGTACACAGCGCTGGTCACACGCCTGCAAGCAAGGGGCGAGTGACGGCGGCGCCAGGACGGGGCCATTCGATCATGCGTGTGCCGTACGTTATGAGAATCGGAAAAAAGTTCCAGATACGAATTCGGGTCCCGCGTGACGTTCGCGAGCGCCTCGGTCGGACAGAGCTCAAGCGCAGCTTGGGCACCACCGACGAGGCGATCGCCCGGCGCCGGAGCCTGCGACTGGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCGCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2583554-2583787 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBR01000005.1 Azospirillum lipoferum strain R1C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2583554 36 94.4 30 .............T........C............. CCTCAAAACTCTCGCCGGCTAGAGATTTGA 2583620 36 100.0 30 .................................... CGGGCGGCAGGAGCGGTTCGAGATGAGCAC 2583686 36 100.0 30 .................................... TGACCGTCTGTCCGCAGGACCGGGAGGATT 2583752 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTGCGGCTGGACCCCGATCCCACAGCGGCTACAAT # Left flank : CGATCGTGACCGCGACCGCCGCCGCCGCCGTGACGACGATGACGACGATGTGTCGGTGATCGGTTTCGGTGACCACATGCCCGCCTTCATGCTGCGCTCGGCCCGGCCTCGCCCGGCGGCGGAGACGGTCGCGGAATCCGCCGAGCAGAGCCAGGAGGGCTGAGTCCGTGCAGACCATCTTCGTCATGGTCAAGTGCGAGCTGGGAAAGGCCTATCTGGTCGCCGACCAGGCGGTCCAGCAGATTGAACCGGTGTCGGAGGTGCATTCCATCTCCGGCCAGTACGATCTTCTGATGAAGTGCTATCTCGGACAGGACGACGACATCGGCCGTTTCGTGACCGAGCATGTCCAGACCTTGCCGGGCGTCCGCGACACCTTTACGCTGATCGCCTACAAGGCCTTCGCATAGACACTGATCATCGCTTTGCGGGAAGGGCCGGGAATTTCCCGGCCCTTTTTTCTTTTCCGAATTGTCGCTGACCGCACCCGGCCGCCCACC # Right flank : TAGGTCTCCAGATAACGCTTTGTTATAAAAGCGCTATCTGGAGATTTTTCCATTGCCATCCGGAGCTAACCAGCCATCAAAACAGCTTAAACTGTTCGTAACGCGCTCCGGGTTCCCGTTTCGTGCGCGCCTCCAAACAGACCATTGTCTGGTATTGGCGATCGGTGAAGGTCAAGATCTGCACTTTTCCCCTCTTCGGGACATTGGAACGGATGCGTCCGATTCGCGCTTCAACCTGCGGCGTTCCCGCACAGAAACGCAGGTAGACGCTGAACTGCGACATCTCAAAACCTTCATCCAGCAAGAAGTTCCGAAATTTCGTCGCTGCCTTCCGATCCGACTTCGTCACCGTCGGCAGATCAAACATCACCATCATCCACATCAAGCGATACGCGCTGAGTGCCATGCGCGCCCTCCTTGCGAGATTGCGGAACAGCCAAATCGAGCGGCAGTGGCAACAACGGCAAATCCAAGACCTTCCGTTCACCCACCATCACCTG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCCCGATCCCACAGCGGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCCCGATCCCCCAGCGGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 349968-349577 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBR01000001.1 Azospirillum lipoferum strain R1C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 349967 38 100.0 33 ...................................... TTCTATAGGAATCAAGTTCAGAGCGAATAATAT 349896 38 100.0 34 ...................................... AAGAAATATAAGTATAAGATTCAGTACTACAACA 349824 38 100.0 35 ...................................... GCCGCTTCCGAGAGAGGGCGACCATTCGCGATTTC 349751 38 100.0 31 ...................................... CCTGTGGATTTAGATACGCGTCACAAACGAA 349682 38 94.7 30 .....A...............................A ACCAAAAAAATTGCACTGTTAAGAACAGTG 349614 38 81.6 0 ......................A......C.C..TTGA | ========== ====== ====== ====== ====================================== =================================== ================== 6 38 96.0 33 GTTCAGCGGTGTTCCGCTATGGGAAGCGGATTGAAACT # Left flank : TCATGCATCTGCGGATCGAGCAGCGGGGTCAGCACCTGGGCGACGGCGGTCTGCGCCACCCGGTCGACCACCGGCGGAATCGCCAGCGGGCGGGTTCCGCCATCTTCCTTGGCCACGTCGATGCGGCGCAGCCGGCCCGGACGGTAGGTGCCCTGGGCCAGGGCCAGTTGCAGCCGCACCAGCCGGGTCGGCAGATCGACGGAGAACTCCTCCACCGTCATCCCGTCGCCGCCGGCGCCGCCCTGGTTGGCGAGCACCCGCTCCCACGCCGCCTCCAGCCGATCCAGCCGGATGATCCGGTCGAACAAACCAAGGGTTTCGGCGGGATCGGGCATGCGGGAACCCTGTGGAAAGTCGAAAATACGAGGATTATAGGCAGGTTGATGACCATTCCGTACATATTTCCGATGAGGCTCTTGACAGAATGCGGGCTGGGATTTGCCGCTCTGTGGAAAGGCGTGGAGAATGAAGATGTTGCGTCAAGGGGTTGTGGAAGGTAG # Right flank : GCGAACCGCCTTCCGATTACCCCGCATCCTGCCCCTCAGCCACGGCGCGCAGCAGTGCGGCGTCGTCCGGCAGCGGATTGGCATGGCCCCAGAAGCCGTAATCCGGGAGGGCGCCGCCGCGCCAGCCGCCGGGAAAGGCGCGGTCCAGCGCCGCGATCACCATGCCGGGGCCAAAGACATTGATCTCTCCCGGCGACAGCACGATCAGCGGGCGCAGGTCGTCGGGGGCCAGCCGGTCCGTCACCACGGCGCAGGCCGCGTGCGGCAGCCGTGCCAGACGGGCGCGGCCATCAAGGACCGTTTCCAGCGTGGCGACGGCCTGTTCCCCGGCCGCTTCCATCTCCGCCGTCACGCCTTGTGCGGCGCGGTCGTCGCGGCGGATGGCGGCGATTTCCGCCGCCGTGGCCCCGGCTGCCCGCAGGCCGCGGATATGGCCGCGGTCGTTGGCGGCCACCAGCTCCATCCGCCGGGTCCAGGCGGCGGCGGGCAAGGCCAGCAAC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAGCGGTGTTCCGCTATGGGAAGCGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA // Array 2 352700-352517 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBR01000001.1 Azospirillum lipoferum strain R1C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 352699 37 100.0 40 ..................................... CCAGAGGAAGAGGCAGAAGGCTTTTCCACCTTCCTCTTCC 352622 37 100.0 32 ..................................... CGATCGAGACGACGGTACCGATGTAGTGGTAG 352553 37 94.6 0 .................C....A.............. | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 98.2 36 GTTCAGCATCGTTCCGCTATGGGAAGCGGATTGAAAC # Left flank : AGGCGACGCCGTGTTCAGCAGCTGCCGCCCCCAGGCCCCGCGCAGCCGTCCTGGAAAGGCGGGATTCCACACCAGATCGCCGACGCTCCACCCGCGCGGCGGACGGCAGAGCGCCACCACCTCGGCATGGAACCAGCGTTGCGGCAGTTTGGCCAAGTCCGCCACCGCGATCGGCGCCGCCAGTCGCGCGCCGATCGGATCGCCGTCCATGCCCGAGTCGCCATCTTCCCGCATCCCGCGATCCTCGCCCTACCATAACCCGGTGTCCGCGTGTTTGGCGGCGACCATGCCACATCCACGGCGAATCCGGCCATGGCGAATCCGCCGAAGCGGGCCATCGGACCCTGTGGATATTATTCAATCAATTGATACTACTAAGAAAGTTGCAGAAATCCTGGTGCGCGGCGATCCGCCTCTTGACAAAAAGCCGACCTCAATCGCCTGCCCTGTGGAGAGAGTGGGAAATCACCTTTGTTGCGTCAATGGCTTGCCAGAGGTAG # Right flank : ATCTCAAACCGCATCTCGCGGTAGTTCATAAGCGGGGGGGCAATCCGCCCCGTCACCGAAACGGCGCTTTCCCTGACCGCATCTACAGCAGGTAGAAATCCTGCGCCTCGGCCAGCGGGGCGCCGCCATAGCTGCGGGAACGGGTCAGGCCATGGGCGCCGATGGCGTAGACGCGCAGGCTGTCGCCCGGCGCCAGATGGACGGCGACCTTTTCGGCCAGACGGGCGGCGGCGTGTTCGCTCATGCGGGCCTCGAACACGCTTTTCTGCACGCGGACGGCGGCATCCTCCAGCGCCTTGGCGACGCGGCGGCGGCGCTTGTTGTCGGCCACGTCGTAACAGAACACCATCAGCATCTCCGCCGCCGCCATGGCCGCCCGCCTTTCGCAACGCCGTTCAATAATCCAGGGTGAAGGGCCGATAAGGCGCCTCGCCCAGCGTATGGCGGCCATAGGCGACGACTTGCGCCTGCATCACCCGCCGCCACAGCATTTTCCGCCC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAGCATCGTTCCGCTATGGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 354271-353955 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXBR01000001.1 Azospirillum lipoferum strain R1C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 354270 37 100.0 32 ..................................... GGGAGGGGCGGACCGGCCGCCCCCGCCACACA 354201 37 100.0 30 ..................................... AAACTTCTTGGCGTTTTGGGGATTCCAGAA 354134 37 100.0 34 ..................................... AACACCAAATAGAACATCCGACGAGACATTTCAT 354063 37 97.3 35 ..................................G.. TCCATTTCCTCACGGCGGAGATGTTCTCCCGGCGT 353991 37 86.5 0 ........A........C..A.A...........G.. | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 96.8 33 CTTCAGAAGCGTTCCGCTATGGGAAGCGGATTGAAAC # Left flank : TCTGCGCGCCTTTCACGGCCATATGCGGCGCCACCGCCCGCACTGGCCGCGCACCGCCGATCTGGGCGAGTTCCTGGCAGCATCCGATCCCAGCCTGTGGGACCACCGCGAGCGGTCGGCATCGTTGGAGTACCCGCGTCTCAAGTCCTTCAACGAGATCCGCAAGATCGGCAAGCTGTCGACCGGGTTCGTCCCGCCGAACCCCCGCCCCGACCGCCACCTGCCGGTGCTGCCGGACACCGACGCCGCCCTGCGCTACGCGGAAGCGGCGGTTCTGCCCTACAGCCCGGCAGAGTCGAAGCGATGAGGGCGGGGACCGCCGCGCTGCTGGCGGGGAGGGAACCCTGTGGAAATTCAGGAAAATATTGAGATCGTTCCGTTTCTCACGATGAATGCGGATTTCCTCCTCATGCCCCTTGACGGATCATGGCCGTCCAACATCCACCCTGTGGAACCAGCCGCGGAAAACATCATTGCGACAAGGTGATATGGACGGTAGC # Right flank : AGTAGCAGGACGAGCGACAACCACTTGCTGCCACCCGTTCAGACCGTCAGCGGTTCCATGCTGTAGCGGCCGAGGCCCTGGGCGGCGTGGCTACCGGCGTGGGTCAGGGCGCCAAGGGTCAGCAGGGGCCACAGGGGACCAAGGTCGCCGGTCAGGGTGACGGTGCCGCGCAGACCCTCCATGCGGATGGGCGCATCGCCCTGGCGGGCGGAATGGCGGTGCCACGCCAGCGGGCGCAGGGATGAGGCGTCGATGGTCAGGGTGGCGGCATGCTCCTTCAGGCTGCGCCAGTCGGCGACGACCGTGGTGTCCAGCCAGCGGGCCATGCCGGACAGCCGGTTGCCCAGGCTGGTGAACAAAGACCCGACGCCACCATGCGTCGTGCCGCCCCGGCGCAGGCACAGCGGCGTGACGAAATGCAGACGGGCGGCGGCGGGCGGCGCGGACGCGGCCACCCCCTCGTGAACCGCGATGCGGCGGTCCAGCGGCTCCAGCGCCGC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAGAAGCGTTCCGCTATGGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //