Array 1 1768543-1766733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085927.1 Parabacteroides merdae strain FDAARGOS_1586 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1768542 32 100.0 32 ................................ CGTTGACATAAAAATAGAAGATTTGAAGTGAC 1768478 32 100.0 34 ................................ TGATATTTGGACGTCAGAACCCATACTCCGCTTT 1768412 32 100.0 34 ................................ ATCCGGCACTTCAATACCAAGAATACGCTTAATA 1768346 32 100.0 33 ................................ TTAATAACCGTCGCTTCGATCTCGAATGCGAAG 1768281 32 100.0 33 ................................ AAGAACACAGTCTGACTTTTATAAGGTTCAGAT 1768216 32 100.0 36 ................................ AGATAGGTACGGCTCAAATGATAATGAAGGAACATG 1768148 32 100.0 33 ................................ GGTGTTATTTTGAACGATAACATACAAATGAAA 1768083 32 100.0 33 ................................ AAATCCTGTTTCTTTATCTGACACACAGGCGAC 1768018 32 100.0 35 ................................ TATTGGAGCCGGTAGACGCCAAAAGCGCGCCATTG 1767951 32 100.0 34 ................................ AATACTATACGGATGAGTTTTGTGACCCCTTTAA 1767885 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 1767820 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 1767753 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 1767687 32 100.0 33 ................................ TATTGTGGCAGGAGAAGATGATCCTGAAAAATG 1767622 32 100.0 34 ................................ TTGAGACGGATAAAACACTTGGAGCTAATGCTAT 1767556 32 100.0 35 ................................ TTGACAGTGATAACAGTAGCGTAATAAGTTTGCAA 1767489 32 100.0 35 ................................ TGTAAAGGATAGACAGGATAATGCAGGGAAAGAAA 1767422 32 100.0 33 ................................ CATAGCGGTAGGAGTAGCCATAATAGGGCCTGC 1767357 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 1767292 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 1767225 32 100.0 34 ................................ ATGGAAAAGAGTAGGGAGGTCGAAAGCGTGATAT 1767159 32 100.0 34 ................................ AGGAACGGGTAAACATACTTGAATATGCCGCTTT 1767093 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 1767028 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 1766960 32 100.0 32 ................................ TGACGGTAATTTAAAGGACGGTCTTACCGTTT 1766896 32 100.0 34 ................................ CGTTATATGTTTTATAACATATAGTCGGTTGTTG 1766830 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 1766764 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.4 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1775829-1774223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085927.1 Parabacteroides merdae strain FDAARGOS_1586 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1775828 32 100.0 33 ................................ AATCTCGATCATTTGCCGACAAGATCGCCTATC 1775763 32 100.0 32 ................................ CACAGTGCCACCTTCCGAATCTGTCACATTGA 1775699 32 100.0 33 ................................ ATCTTTTACAGGGACTTCCAACCCAAACACAGG 1775634 32 100.0 33 ................................ CAAGACATTGCGACATTTCAAGTCTTGTCCCAT 1775569 32 100.0 32 ................................ TTGATTTTGCGAAACACATAAGAAGCATATAC 1775505 32 100.0 33 ................................ ATCTTTTCATCCTCATAGACACTCAAAGAAAGT 1775440 32 100.0 34 ................................ AAAATGTGACTCTCTTGCATTTGAGAAGATAGGA 1775374 32 100.0 34 ................................ ATCCTTTCGAGCACGAATGTAGGCAGAACCAATA 1775308 32 100.0 32 ................................ TTGCGAGAGCGCAGGAGTTTTTTCGCAATGCC 1775244 32 100.0 34 ................................ GCTGCGCTATCTCGCGTGTGGCGAGTACGGCTCT 1775178 32 100.0 33 ................................ CATGATTATCAATATTTTATATTATATTCAATC 1775113 32 100.0 33 ................................ AAGGTGCTGCTTATGCGAAGACTCTTGCCGAGA 1775048 32 100.0 32 ................................ TTACTTTCGCCGTCGAGAACAGTATTTGAAAA 1774984 32 100.0 35 ................................ CGTGCGTATGAGGCTATATATAACGCTTATATTCG 1774917 32 100.0 34 ................................ TGTGACGAGGAGAGCATAGTAATGGGTATTATGT 1774851 32 100.0 33 ................................ AAGGCGTCGTAACGAACATTAACATCAAAACGA 1774786 32 100.0 34 ................................ TCCTTCTTACGCTCAAATTGAGCTTAATTGGCTT 1774720 32 100.0 34 ................................ AACAGGATCAAAAGTATGATGACGCTCAGCGTAT 1774654 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 1774587 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 1774523 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 1774457 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 1774390 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 1774325 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 1774254 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 25 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //