Array 1 1080347-1081180 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UHGX01000003.1 Streptococcus pyogenes strain NCTC13741, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1080347	    32	 100.0	    35	................................	AATAATGCCTATCCACTATATTTTACAAAGAAATC  	
   1080414	    32	 100.0	    35	................................	AGATTCGGCTAGATATTCCAAAAAATCGATAAAGC  	
   1080481	    32	 100.0	    34	................................	TATATAGTCAGCCACATACTGCGGTACTTCTGGT   	
   1080547	    32	 100.0	    35	................................	GCTTTTAGACGTTTTACCGCTGACTGATTGCGATT  	
   1080614	    32	 100.0	    34	................................	TAAATCACTAGTAATTGTATATTGTAATTTCACG   	
   1080680	    32	 100.0	    36	................................	TGCGTTTGTTGTTGGATCCTGCGAAAAAGATATCCC 	
   1080748	    32	 100.0	    37	................................	ACCAACTTGCTTTCCAATTTATCAATTTGGAGATAAG	
   1080817	    32	  96.9	    35	..............A.................	ATGTTATTTCTCCTCGATCTCGTCCAAAAGTCTTA  	
   1080884	    32	 100.0	    34	................................	GGAAGGAAATAGTTGTAAAAATGCCAAAAAAACT   	
   1080950	    32	 100.0	    34	................................	TTTGGTTTAAGCTTAAGATTCACTACTCAATAGA   	
   1081016	    32	 100.0	    35	................................	GAATAACTCTCCATCTTCATCAAGTGACGGTTCGT  	
   1081083	    32	 100.0	    34	................................	ATTAGCACTGGTTATATTAAGTGCCGAGGAAAAA   	
   1081149	    32	  96.9	     0	...............................G	|                                    	
==========	======	======	======	================================	=====================================	==================
        13	    32	  99.5	    35	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	                                     	       

# Left flank :   AAGGCGATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA
# Right flank :  GATGAACCCGATCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTTTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGATAAAAAACTCTATTGGTATGGCATTGTCAAAACCTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTAC

# Questionable array : NO	 Score: 9.23
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCCTTCATGGGTGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.12%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-5.50,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : NA
//