Array 1 26157-21993 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQZ01000028.1 Paenibacillus thermoaerophilus strain DSM 26310 Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 26156 32 100.0 35 ................................ TCCGTCAGCTTCCCGAATCTCCAGCGTCACTGGCA 26089 32 100.0 36 ................................ CAAACATATCAAAGTCATCGTAGAAGGTTGCTTCGC 26021 32 100.0 35 ................................ ATATTGCGTTTAGAATATCGCAGATTTCCTGATGA 25954 32 100.0 36 ................................ GTTAATAATCGCTGTGTACCGTCTTCTTGCGGCTCC 25886 32 100.0 38 ................................ CGCTTTCTGCTTTTCGCAGCGTCTAACGCCATTGCCAA 25816 32 100.0 35 ................................ TTATGGAGATTGAAGTAAACTTCGACGCTCTGACC 25749 32 100.0 34 ................................ GCCTCGAAATCCATGTAATAAATCGGATCGACGA 25683 32 100.0 34 ................................ GAAGACGTCAGGCGCCTTTTTGAAGACGTTAGAG 25617 32 100.0 36 ................................ CCCGTTATGCGGCGGCGTTTCCCATGCTATGCGCGC 25549 32 100.0 34 ................................ TTTATTTCGCCTATGAATACTTCGGCGAAGACTT 25483 32 100.0 36 ................................ CGTGTCGATCCGTGGACATGTACATGATTTGGGCCA 25415 32 100.0 40 ................................ TGCGTTATTATGAGTTCGATATCTTTGGCGAGTTGGATTA 25343 32 100.0 34 ................................ TCGTACAGTCCGTATGTCGCCACGCTGCCCGGGT 25277 32 100.0 37 ................................ TGTTCTATGGTAAAGATAGTAAAGAATGGTTATTCTG 25208 32 100.0 35 ................................ ATTCCACCCCATCAACATGGACTGGTTTTACCAGA 25141 32 100.0 37 ................................ ATGCAAACACCCCATTCACATAGTATGCTTGTTTGTC 25072 32 100.0 36 ................................ CCCGTTATGCGGCGGCGTTTCCCATGCTATGCGCGC 25004 32 100.0 35 ................................ CATATTCGCCAACGCCGCCCGCGCCGCTTCTGCAC 24937 32 100.0 36 ................................ ACGAACAACGTTGCCGGTCGTGTCGCAAAATTTTTC 24869 32 100.0 34 ................................ AACGGCACTAAAAAAGAATATGTCATTGTGCACA 24803 32 100.0 37 ................................ TCCGTACAGATCATTCTTGTAGAAGAACCGCCGGAGG 24734 32 100.0 36 ................................ AATAGCGGCGTTTGCCAATCCGACAATAGAAGCAGG 24666 32 100.0 35 ................................ ATCAAGCTGTTCATTGGAAGCGTACCATGCAAGGT 24599 32 100.0 35 ................................ TTAGCTTTAGCGGACTTGGTGCAAGACAACGAAAA 24532 32 100.0 34 ................................ GTTGCAAAAAATACTCGGGCACACTTCGCTCGAA 24466 32 100.0 35 ................................ TGCGTTAAAAAGGATATTGCGTTTAATTGCGTCGA 24399 32 100.0 34 ................................ TTTCGCCTTGCGCGCTTGGTATTCGATGTTGTCC 24333 32 100.0 33 ................................ TGTGGCTCCGTCTAGTTTGAGCTTATCCGCCGC 24268 32 100.0 35 ................................ ACGATGGCAAGATAGATTTCTGTCAGACGGGCATC 24201 32 100.0 35 ................................ CGATTGGAGCCGCGCCCGCTTCTTGTCCTCTTGGC 24134 32 100.0 34 ................................ GACAAATCTTGCTGCCGTATCCATACGAAATACC 24068 32 100.0 39 ................................ TATATCGTCATAGGTATAATCTTGACAAGAGGAAAACGC 23997 32 100.0 38 ................................ AATTGTAAACCGCATGTACCTGACGTTCCTACGCTTTT 23927 32 100.0 39 ................................ ATTCATAGTCAAATATTGTCAACTGTTTACCTTTGAAAA 23856 32 100.0 37 ................................ ACGCCCTTGCGCTCAACTGCTAGATACGCCGTCCGCA 23787 32 100.0 39 ................................ ATGGGTATTGACTTTGCGTTAGGTAAAACGCGCGGCGAC 23716 32 100.0 38 ................................ CACTAGGTAAGCTATTGCCATAGTCTCATCATGTACGG 23646 32 100.0 37 ................................ TCAAGTACGCCGCGCCGTATAATCGAATCATTACGCC 23577 32 100.0 33 ................................ TTGCGTAATCCCATTCCTGTCGATAATTCGCCA 23512 32 100.0 36 ................................ CGTTTGCATCCACCTTTTTCAGCAGAGCATAGTTGA 23444 32 100.0 33 ................................ GATTTTGGCCTCGTTGTCGTCGAGGTCCTTTAC 23379 32 100.0 37 ................................ TTCTCGGTGCTGGAAGTATAAAACCGGCAATCTTTGG 23310 32 100.0 34 ................................ CTTGGTGAGCCCTTGTGCCAAACGAGCGACGTAA 23244 32 100.0 35 ................................ GCCATCCTCGTTGATGATGTTCAGCTTGACCTTTA 23177 32 100.0 39 ................................ GTCTGTGGCTTATGATGTCCTGGGCATAGATGCGGATGA 23106 32 100.0 38 ................................ ACCTCCTCATGCGATTTTCTTGAGCCGTTGCCGCTCAT 23036 32 100.0 34 ................................ AATCGTCCGCGTCTCGTCGTCATATCCGACCTCA 22970 32 100.0 33 ................................ GATTTGCGGGTAGCCTCGCGCGTCCATCTGCAC 22905 32 100.0 35 ................................ AACATCGTCTTTGTAACCTTTTGGTAAGGCCCACT 22838 32 100.0 39 ................................ CGATCGAGGAGCTTGTCAACCACAGGCTCACGTATAAGG 22767 32 100.0 38 ................................ CGGTCAGTGTTTTCGGACGTGTATACTTTTAGCACTCG 22697 32 100.0 36 ................................ TTCAGCTTTTACGGCATCGGCTTGAGCTTTTAACGA 22629 32 100.0 33 ................................ CTGCCGGACTTGCGGGCCGCAAGCGATAAAATG 22564 32 100.0 38 ................................ TCCCGGAACTTGACCGCAAGGCCACGCAGAAGGCCGTG 22494 32 100.0 38 ................................ TGCGCCTCGATCCACGCGTTTACCTTGTGAGCGTTAAT 22424 32 100.0 33 ................................ ATCTTTCTTGGCATTGCCCTTGCCTGTCGCGAA 22359 32 100.0 36 ................................ GGCACGAACATTGACGTTACACATACCCATACCGAC 22291 32 96.9 35 ..................A............. GACTGAATCTAGTTTTACGGAGTCAAATTTCACCA 22224 32 100.0 34 ................................ ACACCTCCACCAAATTTCCGAACTCATCAAACCT 22158 32 100.0 36 ................................ GGGCTGCTTGGGACTTGTACCTAAAATCAAAAGATT 22090 32 100.0 34 ................................ TTGCGTGATGGATGGCGAGCTTATGCTAGACAAA 22024 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 62 32 99.9 36 GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Left flank : GCCATTCCTGTGGAAATAAGGGAGGCATAGGCTTATGATGGTTCTCATTACGTACGATGTGGAAACCGCTACGGCTGCCGGTAAAAGAAGGCTTCGCCAAGTTGCCAAGCACTGCCTAAACTATGGACAGCGTGTGCAGAACTCGGTTTTTGAATGCTTGGTTGATCCCGTTCAGTTCAAACAGTTAAAAGCCACACTTGAAAAAACAATCGATCCCAGCAAAGACAGCCTCCGCTACTATATGTTGGGCAGCAATTGGAAAAATCGTGTGGAGCATGTCGGCGCTAAAGAAACTTATGACCCGGAAGGACTGCTGTTTATCGAGTAAGATGCGCGAACCCCAAGCTCACATGATTTCCCTGGGAGGTTCGCACCTCAAGCAGGACAAGGCTTGGCGGGTTTTTCCGACTGAAAAATCACGTTCAAGCCCCCCTTCCGAAACCAGGTTCGCGAAAATAACCTTCAGAACCCTTGCGTAGCAAGGCTTCTCGCATCATGCA # Right flank : ATCTGCTTGCCCTCCGCGTCTCGCCGCCGCGCGCTGGTCGCTCCCCACGAAAAAAGAGCAGCAGCCAACTTCTTTTGGCTGCTGCTCTCCACCTTACCACTTACCCCAGATGCTCCCGAACCGCCGCTTCCAGCTCCGCCAGAGGACGAACCCCGACCAGCGTGTTTACTTCGACGCCATCTTTGAACAGTTTGAGCGTCGGAATGCTCATCACGCCGAAGCGTCCGGCCGTCTCGGGGTTTTCATCCACGTTGATCTTCGCGATCGTCGCGGCATCTCCGAGCTTCTCGCTCAGTTCATCCAGAATCGGCGAGATCATTCGACACGGACCGCACCAAGGTGCCCAGAAATCGACCAGTACAACGCCCTCTTTTATGGTTTGTTGAAACTCCGCATCTGTCGTATGAATAACTGCCATCTGTATCGTCTCCTTTTTGTTCTGAATTATTCCTGGATGCGATGAAGTGCCGATGGGCGGGTGCGGGACGGGGCCCCTGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 35105-34264 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQZ01000028.1 Paenibacillus thermoaerophilus strain DSM 26310 Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 35104 32 100.0 34 ................................ TGATAACGACGCGGGTTCTACGGGTGGAGATGCC 35038 32 100.0 35 ................................ AGATATGCGCTGATTTCTTCGAGATTGGTTGCGGC 34971 32 100.0 36 ................................ ATCCCGGGATTGGTATCGCCATGTGGCATAGTCCAC 34903 32 100.0 33 ................................ TTCGCTTCAGGGGTCGGGGCTCGTCCAGCTCCA 34838 32 100.0 34 ................................ GGCTATGTCTCGGCAGCGTCTCCCGGATCGCCCT 34772 32 100.0 34 ................................ GGCTATGTCTCGGCAGCGTCTCCCGGATCGCCCT 34706 32 100.0 39 ................................ TCCGCCCGATTCTGGATGGATATAAGACCTTCTTTTCCG 34635 32 100.0 36 ................................ AATCATCGACCGTGGAGGCATCGTCCAAGTTCGCCT 34567 32 100.0 37 ................................ CTCAAATTGTCCATTGCCGTCGTCAACTCCCGCTTAA 34498 32 100.0 35 ................................ GACACCATCCTTGCGATGCTGGCGCAGCTCATAAA 34431 32 100.0 37 ................................ ATCTTCAGTGCGTCATTGACCGTTTTCAGCATAATGG 34362 32 100.0 35 ................................ GACAAGACGACGTTCCAAGTCCACCGGCTCATGTA 34295 32 84.4 0 ...........................CGCTG | ========== ====== ====== ====== ================================ ======================================= ================== 13 32 98.8 36 GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Left flank : CGCCTCCGGCTCCTCCAGAAAATTATGTCATAGCTACATGACTTATCCATCTTTCAGGATGGTCGATGGTTGAAAATCTAAGAACGAGTGAGAAAACGCGAGAAAACATTAAATAATAGTGGGAGGAAATCACAGTGTCAACCGGCTGCATG # Right flank : TTCACTTTTTTGATACAAAATGTATCTAATATTTGCGGCTGGAATAGCAGGAATTTATCCCTTCGAACAAGAATAGTTTCCCAGAACTAGCAACCATCCCAGAATTTCATTTTGTTTTTAGGACTTTCGTTCCTTACCCCAACCTTTCTCCCTTAAATTCGACGGTTGTCATCAAAAAGGAGCGGATTGACGATTGTATTACGCGCATCGTACCGATTCCTCCGATAAGAGCGGTTGGCAAAAATTAACCGACCATTTGCAGAACGTCAGCGCGAAAACCTCCGAGTTCGCTTCTGTCTTCGGCGCGGGCAAATGGGGAGCGATTGCGGGATTGCTGCACGATGCCGGGAAATTCTCGAAGGCTTTCCAACGCCGATTGAACGGCTCCCCGGAACCGGTCGATCATGCGACGGCCGGCGCCCAATATATTGATAAAGCTTGGAATCAAGCGAAAATCGCGCGAATCCTAGCTTACATCATTGCCGGACATCACGCGGGAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3772-134 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQZ01000014.1 Paenibacillus thermoaerophilus strain DSM 26310 Scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 3771 32 100.0 35 ................................ CGGCGCCCACGGAATGCTGTCGACACGCTTACGCT 3704 32 100.0 37 ................................ CTCCGCTGCTGCCGATTCAACATCTCGGCCACCTTTT 3635 32 100.0 35 ................................ TTCGACGTAGCCGCAACATCGCCGCCCGCTGTCTT 3568 32 100.0 34 ................................ CGTCAAGTGTGCATGACGAAACTATGGCAATCGC 3502 32 100.0 38 ................................ TCGCGCTGCCTCCGAGTCAGCAGCGCCGATGACACCGC 3432 32 100.0 34 ................................ GCCCATATAATGAAGAAACACGAAAAACAACGTA 3366 32 100.0 34 ................................ TCATATGTCCGCTGTCTCCTGCATGGCATTGAAA 3300 32 100.0 38 ................................ ATTATCGTTTACTAGATAGGCAATTGCCATAGTTTCGT 3230 32 100.0 33 ................................ CTTCACACAAGTAACAAACGCTATCATAACTAA 3165 32 100.0 34 ................................ TCAATACTTTTACAGTATCGGAAGCGGAAGACAT 3099 32 100.0 35 ................................ CGATTGGAATAGTCGGGATTATTTTCAATTCCGAT 3032 32 100.0 38 ................................ CTGCGAAAAGATCAGCACTGGGCCCGCGTCTGGGTTAT 2962 32 100.0 34 ................................ GTTAAGCACCGACGAACTTGCGGAGCTTGATCGA 2896 32 100.0 34 ................................ TCCGCACCCTCTTTTTGCCCATACAGTTCCTTCG 2830 32 100.0 37 ................................ CGCGTTTGTACTGCCGCTTGTACCCGAGCCGCTCCAA 2761 32 100.0 38 ................................ TACAAAACACCGAAGTGGAAACGGAAGCGGAAGTGCAT 2691 32 100.0 36 ................................ CCGATCCACGCTAGATACAAGCTCACCTAGACGCTT 2623 32 100.0 35 ................................ GTTAAGCTAACGCCAAATTAACGCTATCTACTTAT 2556 32 100.0 34 ................................ AGCCGTGCGTCGCCAAATCCGAACCTCCGGCGCA 2490 32 100.0 35 ................................ AGAAAAGCTACAATGTCGGTGTGGCACCAGGGACT 2423 32 100.0 35 ................................ ATGGTTTATGACGTATCCATCAGGAATCGGACCGT 2356 32 100.0 34 ................................ CTCAAACCATCGGCGGGTGATTAGCTCGATGTAC 2290 32 100.0 37 ................................ GGTATTGCAGCGCGTGGGATAGCCAGACCCGGTAAAG 2221 32 100.0 38 ................................ GAGGCAAGCTGCGCCAGCGTGTAGCTGTGGCGGTCCGT 2151 32 100.0 33 ................................ TTCGCGAGGTCGAGAAGATGGCAGAGTATCATA 2086 32 100.0 38 ................................ TCAATACCGCTAATGCCCTGCCAGTCGTCGTCGACCGT 2016 32 100.0 37 ................................ CAATCCGCATGACATTGCGTATTCATTCACATCCTTA 1947 32 100.0 34 ................................ ATTTTGTTCGCCAATGTTTATTTCTCCAGCGTAA 1881 32 100.0 38 ................................ GTACAGAAATAGGTAATCGCTAATAACGCCATCATAAG 1811 32 100.0 38 ................................ CAACAGTTCGGCGGGCAAGTCCTGACCGATCAAATCTT 1741 32 100.0 38 ................................ GATTCAAGGCGTAGGCTCGTTTAACTTTGCGTCAACTG 1671 32 100.0 35 ................................ ATTGTATTTTACAGCTTTAACCCACCGAAATCACA 1604 32 100.0 38 ................................ CCGGTTTAATATTGTTGGGGTCCGGTCCGATAACGGCC 1534 32 100.0 36 ................................ CCATTGCTTGCCGTCGAAGATTTTGCGCCCGCGATA 1466 32 100.0 39 ................................ TTATACAAGATCGGGGTTGTTCTGGCAAAGGTGCTGCAT 1395 32 100.0 36 ................................ AGTGATCGAGACAACGCAAGAGCAAGACTTTGCAAC 1327 32 100.0 37 ................................ AAGATTTTGCCCGATAACATAGACCGGCTCGAACAGA 1258 32 100.0 38 ................................ AATTTGTCAGCCTCGTCAAGCGCGGCGCGAACAAACGC 1188 32 100.0 37 ................................ GTGAATAGCGATATCCTGCAGGCTGAGCGGGCGCACC 1119 32 100.0 36 ................................ CCATTCGGCACTGGGTAGGGTCCTGGCGAACACTTG 1051 32 100.0 36 ................................ TCCGATTGAAACAAATTACGGGGCTTGCCGAGATGT 983 32 100.0 38 ................................ ACCAGCAGTTTGTCATTGGCTTCGACGGTCTTCTGATT 913 32 100.0 40 ................................ TTTGGCTGCCAATGCGACGCCGCTCACAAAGTCGATTACG 841 32 100.0 36 ................................ TGCGTGCGGAAATCGCCCACCAGGCAAATGCCGAGT 773 32 100.0 34 ................................ AAGAAGCTACCGAACTTATCACGCTCCGCGAAGT 707 32 100.0 33 ................................ CCGCCTCCCTAACTCGCTCTCTCCATCTCTTCC 642 32 100.0 37 ................................ CGCTTTCGCGGTCGCCGCGACGATCGGAAACCAAGCA 573 32 100.0 38 ................................ CAACCCCTGCTTGTATACGTCCCGTTCTGCCTTAACCC 503 32 100.0 38 ................................ TCCTGCGTTATGGAACCGAGGTTGTACGTAATGACATC 433 32 100.0 37 ................................ TTTGCTGGCTCCAGCGTGTTGTATATAACTTCGATCG 364 32 100.0 34 ................................ TTTCGCAATTCGCTCTTTTTCCGCTTCGGTCAGT 298 32 100.0 35 ................................ CGTTTACCGCTTTTGACCCGTTTGCCTACGCCAAC 231 32 100.0 34 ................................ TTCTCCTTGTCCAGCTCCATCACCCCCTTTCGTA 165 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 54 32 100.0 36 GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Left flank : GCTCTCCGGCAAAGTAATTGCCGGCATCTGCCGGGAAGCGAAGCAAGCCGGCGTCCCGGTCATCGCTCTGTGCGGGGGAATGGAGCTATCCGCCGAACAGATGGACCAGATTGGCCTGACGGCCGGATTCTCTATTGTACAACGCCCCTGCTCGTTGCAAGAGGCTTTCCAGCATACGGCGGAATGGGTCGAACAGACCGCCTCGCAAGTGCTTAGAGTCACCCGGATGAAGGGTTTTGTCAAATAAAGCGGGTCGTATGGGCAGCGGCCGCCATTGATTCGGTAGCCGTCAGCCTGTACGATATAGTTTAGGAACATTTGAAGGTTGAAGGTGCGAACCCCAAGCTCACATGATTTTCCTGGGAGGTTCGCACCTCAAGCAGGACAAGACTTTGCGGGGTTTTTCCAGCTTCACGGGCATCTCCGGACCCCCTTCTGCAAACAGGTTCGCGAAAATAGCCTCTAGAACCCTTGTACAGCAAGGCTTCTCGCATCATGCA # Right flank : CTATACAGGAGCCATTCCTGTAATGAATGAATTCGAGGTTTGAATGAAAAAAGTACCTTCTGTATACTGGGGAACGTTCCGACCAAAGAACAAATCCCAGCGCAGGAGGCACTCTACAATGAAGTATAAACACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 122378-121186 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCQZ01000008.1 Paenibacillus thermoaerophilus strain DSM 26310 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 122377 32 100.0 34 ................................ GACGCATTCGGCCGTCTCGTTCGAGACGGCCGAA 122311 32 100.0 35 ................................ ATCCACGTTGTCGGCGAAAGCGACAGCTCTTTGTG 122244 32 100.0 35 ................................ TCCGGTGCATCAGGTAAATTGATCTCAGCGTAATG 122177 32 100.0 38 ................................ ATCTGTCCCAACATTTAAGCGCGATAGGCCGATTCCGA 122107 32 100.0 37 ................................ TCATCCAGCCCCGTCACGGTATAGCTTGTCTCCGGAG 122038 32 100.0 39 ................................ TTGTAGTCAATTTGATCATTCGATTTCATCTCCTTTCAG 121967 32 100.0 38 ................................ TGATGGAAAATTTAGCAGAACTGAGGTCATCGGTAACA 121897 32 100.0 38 ................................ GATCTTGTTGCCGCCGAGGACGTAATCATTGCGCCAGG 121827 32 100.0 38 ................................ GATCTTGTTGCCGCCGAGGACGTAATCATTGCGCCAGG 121757 32 100.0 33 ................................ GTAAATGTAATCCAACTCAATCCCTTCGCGGGC 121692 32 100.0 36 ................................ GCAGCACTCTGGCCTGCGGGAACCGCTGTTGAATCC 121624 32 100.0 38 ................................ ATTGTCTATAACCTGCTCGGCTTTTGGAAAGCCGGGAC 121554 32 100.0 35 ................................ CTAATTTGGCTTATGCCCATCTCCAAAATGGAGCG 121487 32 96.9 36 ...A............................ ATAAATTTTACCGGGGTAAAGAAAGTAATAAGCAAA 121419 32 96.9 34 ...A............................ AATTTGCTTGCGGGTCCATATCGGCCCGCTTGTA 121353 31 93.8 37 ...A............-............... TGTGCGCGGTTGTTGGCAAATCTGACCGCTTTTGCGC 121285 31 90.6 37 ...A.........T..-............... GCGCTTCCCGGCTTCATGAGGAGCAGCGTCGCGCAGG 121217 32 96.9 0 ...A............................ | ========== ====== ====== ====== ================================ ======================================= ================== 18 32 98.6 36 GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Left flank : ATATCGTCATTCATCCGAGGAAGGGCAAGTTGAACGTCACGATTCCGAAGGAGAAAGACAATCATCTGGGCACGTGGCATAAAGAGTTGAACCATTTCGGAGAACAGCTTACGGATCGGCATTTCACTCTCGACAAAGGAACCATTACGGAATATACACTGGAAAAATACCGGATTCGCCAAGATCAAAAACCGAATAAAGAGATCTCCTTGTTATCCCTGACGTTCCAGTTGAATCAGTTGCTGATGCTAATCAATAACCCGCTTTTGTTTCCGCATCTCGCTTATGTGGAGATGTTTAATCGACACTTGGACGAGATATGAAGCTGAGTTTCGCGAACCCCAAGCGAACATGAATTTCCCGGGAGGTTCGCACCCTGCGCCAGAGCTGGCTTTTTGGGAGAAATGAGTATCCTTACTCGAATTTTTCCCGCTCGAAAAAGCAGGTTCGCGAAAATGACGCCCTCAGGCCTTGTGCTGCAAGGATTTTCGACGGATGCA # Right flank : TTGCTAGGTAGGGAAGCCCGTTGAAGCCTGCCAGTGGTCGCTCCCCACGCGAGAGCATACCACCCCATAAATTCTCTCCCCCGTGCCCCTTACAGGGGCAACACGAAAATCCAACATAGAATTCCTAATATAGGAAATGATTCAATCTATTTTTTATGTCAGGTTTGACGCATTGGTAGTGAATAAAATATCGAAATACGACGAAGCTCACGCTTTTCCCGCCCTAGCACTCTTTTTTCACGGTTGACGCCGTCCGTGAAACGCGCTATAGTACGTGATTGCCGAAGGAAACATTTGGCGGAAAGCAACCCGACATCCTATACGAAAGGTCGTCGCATCAAGATGGATCATGGACGGAATGTGGGTTATGACGGTCACGTCATCGACCCGGACAAAACAGTGGATTCCAAGTATTGGGGAACGGAAAACGTCGGCTGGGACGGGTACGTTAAAGATCCGTGGAAGCCGGTAGACAGTCGCCGACATTACGTATCGGACGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //