Array 1 28579-27346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOII010000060.1 Xenorhabdus lircayensis strain VLS X_lircayensis_contig_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================ ================== 28578 28 96.4 32 ...........................A ACCAAGCCCTGAATTTTTTCAGCCAGATCGCC T [28556] 28517 28 100.0 33 ............................ CCAATTTATTTGATACTCTGGAAACCTGTGTAG T [28495] 28455 28 100.0 32 ............................ CATAGTCATTAACGCGAGCTGCAACTGACTAT T [28433] 28394 28 100.0 32 ............................ CCGATGATCGCCGAACTGGGTTTCACATTGCC T [28372] 28333 28 100.0 32 ............................ CAGAATTGGTTTAACTCTCTCCCCGTAACCAG T [28311] 28272 28 100.0 32 ............................ GTATACATAGAGAAATAAACATGAGTGATCGC T [28250] 28211 28 100.0 32 ............................ CGTTTTTATAATAACGGCGTGTTGGGGACAGG T [28189] 28150 28 100.0 32 ............................ TGTCTGAGAACGGTCGCTTGCCCGCCCCTTAT T [28128] 28089 28 100.0 32 ............................ GTGTGATATGGCAGATATCGAACGAATTGATT T [28067] 28028 28 100.0 32 ............................ CACGTTAATCGACGCACCATATTCGTTAATGT T [28006] 27967 28 100.0 32 ............................ TACACGCCGTCACGAGCATCGATATCACCATT T [27945] 27906 28 96.4 32 ...........................A GAACCGCCAGAACGAATCTTTCCGCTCTTACC T [27884] 27845 28 100.0 32 ............................ CAAACCGAAATAGCGCCGAGATCTGATCTCAG T [27823] 27784 28 96.4 76 ...........................A GGTGTTGCACTGGTCATACCGAACTTACTTACGGGGAACACGGATGGGGTACGGGTCGTTAACTTTTAGTATTGCG T [27762] 27679 28 78.6 32 ..C.........CT.........C..TT ATCGATATTGATAGCAATAAGTTCTATCTACG A [27673] 27618 28 78.6 32 ..C.........CT.........C..AA AACTTTGTCTACCGATAATAAACAACCATCCG A [27612] 27557 28 82.1 32 ..C.........CT.........C...T GCAAGGTGCTGTCTTTAAATTGCCATGAAGCG A [27552] 27496 28 82.1 32 ..C.........CT.........C...T CAAACTGTTTGATGACGGTCTGGTCATACGCG A [27491] 27435 28 78.6 32 ..C.........CT.........C..TT TTTAATAATTGAGTGGGAATGATTTAAAGCCG A [27429] 27374 28 82.1 0 ..C.........CT.........C...C | A [27369] ========== ====== ====== ====== ============================ ============================================================================ ================== 20 28 93.6 34 GTGTTCCCCGTAAGTACGGGGAAAACCG # Left flank : GCGAGGATAGAGAGTGGAGCAATGTTAGTCCTGTTGGTAAGGAAGTGATTCGATGTACATACCAGACAAAGGAGACATTGTTTCATTCCGAGGAGTTATCTACCCAAGGTGCAATTCTTATCCATCAGGTGAAATCTTTAGATTTTTCGGGGCGTCAGGTCAAATTTATTGAAAAAGCGCCTCAAGACATTATCGATAAAGTAACCGAGTTAACGAAGGTTATCATTTTATAGGGTTTAGCTTTGTACCTACGAGGACACTGTATTAAGTCTAATTTCTTTAATTTTAAATCTGGTTTATTCCTTGTGTGGGGAATGCTCATTCGATTCTATGGCAGATAACTTAATGAGTCTTTTTAAAGAATGGATGAAATTTGATCAAATTTACAGAGGGCAGGTAGGAAAAAATAGAAGGACGAATTTGACTGCTTTATAAGCTGAAAAAATGGTAGAATTTTACCCCTCTAAAAAGGTCTTATAAAACAGTTGGATAAAATTAGA # Right flank : TAATTTTATCCAACTGTTTTATAAACCCTTTTTAGGGCGGAAAAATTCTACCATTTTTTCAGCTTATAAATCAGTCAAATTCTGCCTTTCATTTTTTCTGGTTTACCATCTGTAACGCAGATCGCATTTCATCCATATTCTTAATTCTTACTTATCAACTTATGCGACTTCCATCGCAGCAATCACAAAATAACCTGTTAGCCTTAGCTCAAATGAGAGCGCTCTCATTTTTGGATTAAATCAAATAATGGGACAACAACAAAGAGAACAAAACCATGAAAACCATTCTATTGTGTTGTGCGGCGGGAATGTCTACCAGCATGTTGGTGCAGCGTATGCAGTCAGAAGCTGAAAAACGAGAGTTGGATGTGGTTATCAAGGCTGTGCCAGCGCTGGAGTTGGAAGCCTGTATCCATGAAGCCGATGTAATTTTACTCGGGCCGCAAATTCGGTATGAACTTGCCCGCTTTACTGCGCTGGCTGATCCATTGGGCAAACCC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGAAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39464-39858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOII010000060.1 Xenorhabdus lircayensis strain VLS X_lircayensis_contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39464 29 100.0 32 ............................. ATAACTAATTCTCACGTCGTCGGATAGTGTTC 39525 29 100.0 32 ............................. CAGGAATAACTCCTTATAACTATCCATTAGTA 39586 29 100.0 32 ............................. GTTGGTCAAGTTCAGATGATGAATTAGCAACT 39647 29 100.0 32 ............................. CTGTTTATCGTTTCACAATCGACAACTGATTA 39708 29 100.0 32 ............................. AAAAATACGGAAAAAACGCAGGACTGGAGTAA 39769 29 96.6 32 C............................ GGTTATTACGTTCTTTCCGATGCTCTTCGACA 39830 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : TCCCTTAATTGAAGAAGTACTCGCAGCGGGCGAAATCTCCCCGCCACCACCACCTGCTGATGCACAACCTCCTGCCATTCCCGAGCCAATATCTATTGGTGATATTGGTCACAGGAGCCAGTAAATATGAGTATGACGGTTGTCGTAACAGAAGCCGTTCCTCCTCGGTTACGGGGACGTTTGGCCATTTGGTTGCTGGAGATACGGGCCGGGGTTTATGTCGGAGACATCTCCCATAAGATTAGAGAGATGATTTGGGAACAAATCACAGAACTCACCGAAGATGGAAATGCGGTTATGGCATGGAAGACTAACACGGAATCTGGGTTTGATTTTCAAACCATTGGGGAAAACAGAAGGGAACCGATAGATTTTGATGGTCTTCGTTTAGTGAAATTTAAGCCACTTTCTGAGGATTAATTTGGGGGAATTACAGCCTATTAAAAATGGTAGAATTTTCCCTACTGATAAATATTTTTTAAAACAGATAGTTATATTTA # Right flank : GTTCTGGGCTGCACCCAGCAATGGATGCAGCACCTGTAGCTCATCAACGAGCATGACGTAGAGCTTCATAGCGTATGCGAACCCGAGAGATCACATTTAAGGTCACAGAAGTACCCTATAGTGGCGGTAATACCCTACGGCTTGCAGTTAGCCTGCACAGCAATATCGTCGAACAATAATGACTCTCTTAGCCTCTCCCGTATGGTTTTTTGAGAGGCAAACCACATACCTACGTCGCGCTTTACTCGCGGAACCAAGGAATCGTATTGCTCGATCTCACTCAATGCCCGAGAGGCATCAACGATAGCGCGTGCGCGCGGCTGTCTAATGGCCTCGTATTTCTTTAAGGCCTCCGCATAATCATCAGTATTTCGAAGGGTATAACCGAGAACCGCTGCATCCTCAATGGATAATCCTGCCCCTTGACCAAGGCTTGTGTACATTGGATGAGCGGCATCACCAAGAAGTGTTACTCGCCCCTTAGTCCAGGTTTCCGGAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //