Array 1 104973-106588 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDDV01000015.1 Escherichia coli strain CMNB20b NODE_15_length_123424_cov_163.677, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 104973 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 105034 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 105095 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 105156 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 105217 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 105278 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 105339 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 105400 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 105461 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 105522 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 105583 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 105644 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 105705 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 105766 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 105827 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 105888 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 105950 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 106011 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 106072 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 106133 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 106194 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 106255 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 106316 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 106377 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 106438 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 106499 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 106560 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9010-10258 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDDV01000020.1 Escherichia coli strain CMNB20b NODE_20_length_102878_cov_167.393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9010 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 9071 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 9132 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 9193 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 9254 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 9315 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 9376 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 9437 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 9498 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 9559 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 9620 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 9681 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 9742 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 9803 29 96.6 32 ..........................T.. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 9864 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 9925 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 9986 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 10047 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 10108 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 10169 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 10230 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //