Array 1 30930-31557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQR01000171.1 Pantoea vagans strain 848_PVAG 418_61101_746969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30930 28 100.0 32 ............................ ACTGTGTGGTTGGTGAAGATAATATTAGCTAT 30990 28 100.0 32 ............................ GTGTTCGCTGCGCGCGGAAATGTGGCCCGTCT 31050 28 100.0 32 ............................ TGATGGTGCGCATTGCTCCGAACTAGAAAAAA 31110 28 100.0 32 ............................ AGGCGCACTACGGAAACGCCAGTGCCGGTAAA 31170 28 100.0 32 ............................ TCTGCCTTTGTCGCCGGTAGCAGTACGGGTCA 31230 28 100.0 32 ............................ GATAGGAATCTAGGTGTTCAGCCACGTCTGGA 31290 28 100.0 32 ............................ AAAGGCACTGAGTGCAGAACCGTCATTTGGTC 31350 28 100.0 32 ............................ GCCTACAACCGCTATACCGAAGAGGCAGCAAA 31410 28 100.0 32 ............................ TGGAAGCGAAACACCGCAACGTATTTCGCTTC 31470 28 100.0 32 ............................ TATCCGCAGATCCGCGACATTTTCTATCCGAC 31530 27 92.9 0 ........................-..C | T [31550] ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCACCTGGCAGCATCATCGTAAAGCTTCTTTTCGCTAACTGCGGGCCGACTGTTTTACAGATAAAGCCTGTTTCCTCGTACAGCTCTCGCGAAGCCGCCTCTTCGAAAGATTCATCTTTTTTAAGTCCGCCACCTGGCGTTGCCCAGTATGATTTACCTGCAAGCGCATCATTTTGATGATGAAAATGAAAAAGAAGAATACGATTTTCAGGAGACAGAACAATCAGTCTTGATGCCGGACGCGTACGCATAATCGCTCTCTGGATATGGCTGGGTTTTGTTTGGGGTCACTTCAGGCTATAAGCGCTTAGGGCTGGTGGCTGCCGAGTGCAGATAAAGGAAAAGGATGAATGATAACTAGCGCAGCTAATACCTTTTTTTGCTTATTTTTTATTTTATTGATTTTAAATGATTTATATGGAGCTTGTAAAAAAAGGGTTTTTAGTAGGGTTTAGTCAAAAATGACTTCTTTTGAGTGGGTTAGAGTCTATTGGCAACA # Right flank : CGGATATGTCTTGCTACTACTAGCCTCTTGTCTACGCTCTCAACGATAATAAAATCCATAACTTTTATGTTCATATTTTCTACAAAAATAATTCAAAAAATTATGCCCACACTTTAGACATTCTTTCCTCAGCCATGCCTTTATATAGCGACATAAACCCAGAATGAACCAACGAAATCTTTCTCAAGCCAGGCCTCACGCCCCAGGTAGCCCATAAATCCAAAAACCGCACTTTTTTACCCTGTTAATTATGTTGTGTTTTTGTAAACAGATTAACAAACAGCCTGAACCCTGCTATGCTGCCCCACGCGGAACCGGGCACCTTACCCTACTCATGGAATGCTTTGTCACCAGGGTGCACCGGAAACCCATACAATGTGAGCGAGGAGAACGTCGTGCTAGTAGAATACCGTAAGCACGTTGCCGAGCGTGCCGCCCAGGGGATCGTACCTAAGCCGTTAGATGCTTCCCAGATGGCCGCGCTGGTTGAACTGCTGAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44790-45184 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQR01000171.1 Pantoea vagans strain 848_PVAG 418_61101_746969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 44790 28 96.4 40 ..T......................... CGCAGCGACGCAGCGACGCACCGAAGTCAGTTATTTCGGC 44858 28 100.0 32 ............................ GAACGGCGCCAACTTCCTGGCATTTTTTAAAA 44918 28 100.0 32 ............................ ATCATCAGCTTGTCGCAACATGGCATTCGCTG 44978 28 100.0 32 ............................ TGGCCGCACGACGGCTATCAGCATGAGAAGGG 45038 28 96.4 31 ........................A... GAAATAGCGGACCTCGGTGCGCCGCTGCTGG T [45059] 45098 28 85.7 32 ..T........C.....T......A... ATCAGCCCCTAACCGACGGGTCCGAAACGCTC 45158 27 85.7 0 .....................C.-C..C | ========== ====== ====== ====== ============================ ======================================== ================== 7 28 94.9 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAATGCGCGTCGCCGCATCCTGCTGGCGGACAGCAGCAAATATGGCTCCTGGTCGCTGTTCTGCGCCGCGCCGGTGGATGAGCTGACCGATGTCGTGACCGACAGCCGGTTAGACGATGACGTCTGCCGCACGCTGCGCGAGCGCGGGATTGCGCTGGCGCTGACGGATTAATATTGCTGGCAATTTAACTGGCACGCGCCGTATCCGCTCTTTACTTGCTGGAATAAGAGTGAAGGGCGGGGGGCACTGTGCGCGCTTATTAGGGATGAGCGTTATTAAGCGCTGTGCGGATAAGTGCGCTACTGCTGTTTGTTGCGAGAGTAATGAGCATTTCCCACCTCAGGCTTGATTTTTGAGTGCTTCTTTAAACCCTTTTTTTTGTGGTTTATTATAAGTTATTGAAAAATAAGGTAAGTTTTTGCATGCTAAATAAAAGGGTTAAAGCCGCTAAATGCGGTTTTTTGCTGCGATATGAATAGGTTAGTTTGGTAAGGTAACA # Right flank : CGCCTCCCGCAGCACCCATAAAACTAAAACCCCAACAAAAAAGCGCGCGCCTGCCGTCATTGTCAGGCATCGCGCGCCCAGTCATTAAAACGTCTTCAACCCCACCGCCGGAATATTGCGGCCGTAGTAAATCTCACGCATCTCCTTCCACAGCAGGTCGGTAATCCGCTTATGCTCCGCCGGGCTGAGATCTTCAGGACGGGTATTGAACAGGTAGTGCTTCAGGTCGAACTCTTTCAGCAACATCTTGGTGTGAAAGATATTTTCCTGATAAACGTTCACATCCACCATGTCATACATCGCTTTCATATCTTCCGACATAAAGTTCTGGATGGAGTTGATCTCATGATCGATAAAGTGCTTCACGCCGTTTACGTCGCGGGTAAAGCCGCGCACGCGATAGTCGACGGTCACGATATCGGACTCCAGCTGGTGGATCAGGTAGTTCAGCGCCTTCAGCGGGGAAATCACGCCGCAGGTTGACACTTCGATATCCGCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //