Array 1 147325-147720 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKL01000002.1 Cronobacter sakazakii strain cro3415A1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 147325 29 100.0 32 ............................. CGACCCGCTGAGCTGCACAATCCACGGATTAC 147386 29 100.0 32 ............................. CGAGTCGAAATAAATAAGAAGTTCGTCATGGG 147447 29 100.0 32 ............................. CAGTGGGGAGGATCGTCTTATTCCACTGCTGA 147508 29 100.0 32 ............................. CAGCTCGTCACCCATTGCCAGCTTGTAATCTA 147569 29 96.6 32 .T........................... CGGAACTCGCCAGGGTGGCTGGTGTAAGTCCT 147630 29 96.6 32 .T........................... GCCAGCGAGGCATCGGATGCGAGGGTTCATCT 147691 29 82.8 0 .............C...A..A....T..T | C [147716] ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACACTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTATAAAGGGTTACCGTTAGT # Right flank : TCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173779-175211 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRKL01000002.1 Cronobacter sakazakii strain cro3415A1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 173779 29 100.0 32 ............................. GTATTCAGCAGCTGGGTATCTATTATCGTGAC 173840 29 100.0 32 ............................. AGCTTCGGAACAGACCAGGTAGAACTGTGGAC 173901 29 100.0 32 ............................. GCTCGCGAACACAAAAAACCGGGCAAACGCCC 173962 29 100.0 33 ............................. GGAAGGCGACCGCGCCGGACTCAACCGGGCACC 174024 29 100.0 32 ............................. TCCGGGCGCGCATCCTGGCCTTCCGTGCCAAC 174085 29 100.0 32 ............................. GGCTGGTGGGGTGACACTTACCCCACAGTTAC 174146 29 100.0 32 ............................. CACGTGCCAGATGACGCGGCGACCGGCCTCGC 174207 29 100.0 32 ............................. GTTAAGACTGGAGCTGAAAAAGATATCCAGTC 174268 29 100.0 32 ............................. CTTTGGCAGTGTGGCATGTCGATTGCCAGTAC 174329 29 100.0 32 ............................. CATTCATTTCAGTAATGGCACTAGCTGATGGT 174390 29 100.0 32 ............................. GACAGGGAGACCGAGAAAAAACTCCGCAAACT 174451 29 100.0 32 ............................. AACTCCACTTTTTTAGAGAACGGCGGGTTACA 174512 29 100.0 32 ............................. TCTGATAACGTTGCAGCGTGAGAAGCGCACGT 174573 29 100.0 32 ............................. GGGGAAAAAGAAAGCCGCATTAATGTATTTAT 174634 29 100.0 32 ............................. CTGCTTATAATTATCAACACTTGGCTGTCAAA 174695 29 100.0 32 ............................. TTCGTGCGGAGTGACGGCCCAGCCGCCCAGCT 174756 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 174817 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 174878 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 174939 29 96.6 32 ............T................ TCTGCGAAAATTGCCCCATTCTTCGAAAAAAA 175000 29 96.6 32 ............T................ TGGTCGAAACCACGACTAACGGCGGTAAGACG 175061 29 100.0 32 ............................. GGACGCCTCAACGCTAAGTGCAGCTCTACCCC 175122 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 175183 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTTCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //