Array 1 12707-11456 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSB01000039.1 Rhodothalassium salexigens strain IM261 scaffold0039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12706 29 100.0 32 ............................. CGACTGACGAACAACAAGAGCGAGTGGGTCGG 12645 29 100.0 33 ............................. AGATTACCTTGGAGATCGGCGGCGTCGAGCAGC 12583 29 100.0 32 ............................. CCCATCGGGCCAGTATCCAGAGACCAGCGATA 12522 29 100.0 32 ............................. CCGACGATCTTTCGGCTGCCACTGCCCCGGTA 12461 29 100.0 32 ............................. TGCCAGTCGAGTGCGCCCGTCTGGGGATCGAT 12400 29 100.0 32 ............................. TTTGCTGACGCCGCGCGCGGCGACAAGGTTCA 12339 29 100.0 32 ............................. CCGGCGTCCGGGTTATTGTACCAGTCCTCAGA 12278 29 100.0 32 ............................. ACACGACTAATCAGGAATTGAAGCGTTGGGAC 12217 29 100.0 32 ............................. CATCAGGCTGGGATTGCCCCCGCGCACCAGAT 12156 29 96.6 33 ............................A GACGAATGCGTCAATATCGCCGCCGCAGATTGC 12094 29 100.0 32 ............................. ACGAACGACTCGATCAAACCTTGGCGCATTCC 12033 29 100.0 32 ............................. TCGACACCGCCGCGCTGATAGTGCCGGTTAGC 11972 29 100.0 32 ............................. AGTCAGTTCGACAGCACATACACACACATGGA 11911 29 100.0 32 ............................. ACGGCCGGGCTTTTGTGGCGGATAAAGTGCAA 11850 29 96.6 32 ............................C AGCGCCGACAGCGCGGCGTAATCCGCGTCGCT 11789 29 100.0 32 ............................. GCACCTCGAGAGGCAAGACTGCATCGTCGCGA 11728 29 100.0 32 ............................. CGAAACTTGCCGCATCACGTCGAATCTGGAAA 11667 29 100.0 32 ............................. GAGCCCTACACCGCAAACACCGACCTGTGGCG 11606 29 96.6 32 ............................T ACGACGACCGGTGAGGGGCTATAGTGGAAATC 11545 29 100.0 32 ............................. CGCTGGTATCCCTCGGCCTCGTACTCGTCGAG 11484 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.4 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : GAGGCGCCGGCGGAAGCGCAACCGCCGGCCATCGCCGAGCCTGCGTCGGGCGACGTGGGGCACAGGGGATAGGCCGATGATGGTGATCGTGGTCGAAAATGTTCCGCCCCGTCTGCGCGGACGTCTGGCGGTCTGGCTGCTGGAGGTGCGCGCCGGTGTTTATGTGGGGGTCTATGGCCGGCGGACCCGCGAGATGATCTGGCGCCAAGTCGTCGACAATGTCGGCGACGGCAGCGGCATCCTCGCCTGGAGCGCGCCCACCGATGCCGGGTTCGAGATCGAAACCTGCGGCCCCAACCGGCGCGAGCCGGTGGACTATGACGGCTTTCGGCTGGTCGCGTTCCGGCCCCGGGACCGCCCTGGCCCCTCGGTCCAGCAGAAGACCCGAGCTCGCGACCGCACCTGAATACGCCGGATGTGGACCGCCGACCTAAGGCGGACCAGTCGGTGGATTATTTGACATTGTGAAAAATGTTTGCAATCAACGCTCTATACGAAGA # Right flank : TGTGTGCGTTGTCTCTCTGTTTTCGGTCTGAACCGCGCCGGGTTTGCCGGAGGCTCCAACTCCCGAGTAGGATGGAGCATCATGAGCAAGACGACGAACAAGTATTCCCCAGAAGTGCGCGAGCGTGCCGTTCGCCTGGTGCTGGACAATTAAGGGCAGCATGAGAGCCGCTGGTCGGCGATCCTGTCGATTTCATCGAAGATCGGCTGTGCGCCGCAGACACTGAACGACTGGGTCAAGAAGGCCGAAGTGGATCGTGGCGAGCGAACCGGTGTCACGACCGAGATAGCCGAGAAGATGAAGGCGCTGGAACGCGAGAACCCTGATCTGTTGTCTGATCGGGCCAAGCGCGACAAAGCTTTGCGGCCAGAGATCGAACGGGTCTGGGAGCAGAGCTATAAGGTCTATGGTGTGCGCAAGGTCTGACACCAGATGCGCCGGGAAGGCTTCGACGTCGCCAGGTGTACGGTGGCACGGCTGATGAGGAGACTGTGCGGAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27806-30084 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSB01000045.1 Rhodothalassium salexigens strain IM261 scaffold0045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27806 36 100.0 30 .................................... GGCGATCGCCGACGGCCACCGGCTGGACGC 27872 36 100.0 30 .................................... CAAGCCAGTGCAATTGCCTCGCAGACCAGT 27938 36 100.0 30 .................................... CTAACCGCTATTGGCGGGGCTATTTGGCTA 28004 36 100.0 30 .................................... AATCGCGTCACCCGTCTGGCCGGCCGCCCA 28070 36 100.0 30 .................................... GAAGCGCGTCATCCCAACCCTCTACCACTA 28136 36 100.0 31 .................................... ATCCAAGGCTGTTTCGCGCGCCAAGCGGAGA 28203 36 100.0 30 .................................... CGTGCGCCGCGTTGTATTCGGTCGTCTCGT 28269 36 100.0 30 .................................... TGTACCTGTTCCCGTCTGACGATCAGCCGG 28335 36 100.0 30 .................................... CATCGGCCCGGTCGAAAAGGACACATCCCC 28401 36 100.0 30 .................................... TGCAGCGCGCCCCGCATGTCCGACAGAAGG 28467 36 100.0 30 .................................... CATCTGACGTGGTCCAAGGGGCTGCGCGAG 28533 36 100.0 30 .................................... GGCCCGGCAGGAATGGCTGCGAGGGCGGGG 28599 36 100.0 30 .................................... ACGTGCATAGCATCAAGCTGTTTGGCCAAT 28665 36 100.0 29 .................................... GGAGCTCGGTGAACTGGCGCCGGCCTAGA 28730 36 100.0 30 .................................... CCGAGGGCGAGCCGGTCATCGCAAGCGATG 28796 36 100.0 30 .................................... CACTGGCCGTGCCACACGCTGCCATCGAGC 28862 36 100.0 30 .................................... GAGCGCGTCCGGCGCTATCTTACAGCCGCA 28928 36 100.0 30 .................................... GGACTGTGTATTCGGCATAACTCAGGGCGG 28994 36 100.0 30 .................................... TCTCTTGCGTGCGTCTTATAGGTGCCTCAG 29060 36 100.0 30 .................................... CCCCCCGGGGGGCGGGAGAAAGCGGGCGAA 29126 36 100.0 30 .................................... GCTCGAACGTGACGAGTTTGGACCGGCTGA 29192 36 100.0 30 .................................... AGGCCGGACCCAGGAGCGTGCGTGGTCAGC 29258 36 100.0 29 .................................... CGCTGTTCAATGCGGCAAGCGGCTTTTGG 29323 36 100.0 30 .................................... GCCTCTGGCCGTCGCCTCAGCCTCCGGTCG 29389 36 100.0 30 .................................... TGCTACACCCCGATACCGAGGGTCTGGTGC 29455 36 100.0 29 .................................... CTACGTGGTCGACGTATCCACGCGGCAGA 29520 36 100.0 30 .................................... TGCGGGGTCTCAATCGTAGTCTCTTCCAGC 29586 36 100.0 30 .................................... CCGGCACATAGCGGTCGCGCTCCACCCGGT 29652 36 100.0 30 .................................... CTGCTGGTCGGACGAAAGCTTTTTCGCCCC 29718 36 100.0 30 .................................... CAAGGACATGGTGTGATGCGAGCGGCGGAT 29784 36 100.0 30 .................................... AAGGCCGAGCTTGAGTATGCTCGCGCGGTG 29850 36 100.0 30 .................................... GGCCGGCCGGCCAACGACGGTCGGAACACC 29916 36 100.0 30 .................................... CTGCCGGCGCTTGAAGGTGGCGAACGTCTC 29982 36 100.0 31 .................................... GGGGGCCAGGGTCAGGAGCAGGGGCCGGGGG 30049 35 88.9 0 ......................-....G...C.G.. | G [30082] ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.7 30 AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Left flank : CCGATTGGTCCGGGGCTCTTGCCCTGAACCCAGCGGTCGAATGAACGGCATTTGGCGGACCAATTCCTGAACCAGATAGCAAGATACGGTTATGTCTACGATATTGAGCGGCTATCGGATGATGTGGCTCTATGTGATGTTCGACCTGCCGGTTTTGACCCCTGACGAACGCCGTCGGGCGACCCGGTTTCGCAAGACTTTGCTCGATTGCGGTTTTGAGATGGCGCAATTTTCTGTTTATCTGCGTTTCTGTGAAAGCAAGGAGACGGCGGAAACTCATATCCGCAAGGTGCAGTCGGTTCTGCCGCCCGCAGGTTGCGTCCACATCATCACTATTACCGACAAACAGTATGGAAACGCACGGATCTTCCAGGGAACGATGCAGAAACGCCCCCCAGAAAACCCGGATCAATTGGTGCTTTTGTGATCAATCGGGGCTGTTTTTTGGCGTTCAGAAAAAAAGAAAAAGCCCTGAAAAACAGGGCTTTAGGTGAGGGTCT # Right flank : CCCTCATTTCCGCTGGAGGAAAACAGGAGGCACGTCAATGAGCGCTCGACAAGCAAAGGAAGCTTCCGTTAGAACCACGGCTAAGAAAGGAAAGGTTGGAATCCTTTCTTAGTGTGTCGGCCAAGGAAAGGACCCTTTTTCAGACATGGCGTTATCACCGGAGCCATCACGGTTGGGGCAGCGCGTGGCCATTTCGACCGCGGGTGAGCGCGCAGAGGCGTTCGTGCCGCCGCCCTTGCCGCCGACGCCGTCTGTCAGGATGGACCGGCTCTACCGTCAACTCGAGCGCGCGAACCGCGCGATCGGGCGGCTTGATGGCGTGACGTCCATCCTGCCTGACACCCCGCTTTTCCTTTACATGTATGTTCGAAAAGAGGCGCTGCTGTCGTCGCAGATCGAGGGTACGCAGTCGTCGCTCTCCGACCTGCTGCTGTTCGAGAGCGAGGAAGCGCCGGGCGTCCCGCTCGACGACGTGCAGGAGGTTTCCAACTATGTCGCCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //