Array 1 58731-57067 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCIQ01000037.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE116 HEIDELBERG_S10_trimmed_contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58730 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 58669 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 58608 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 58547 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 58480 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 58419 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 58358 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 58297 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 58236 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 58175 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 58114 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 58053 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 57992 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 57931 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 57870 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 57809 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 57748 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 57687 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 57626 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 57523 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57462 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57401 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57340 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57279 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57218 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57157 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57096 29 96.6 0 A............................ | A [57069] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //