Array 1 11721-11866 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CNUQ02000015.1 Streptococcus pneumoniae strain 277394, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence           	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	==========================	==================================	==================
     11721	    26	  96.2	    34	..................G.......	TTTGGAGCCAGCCTGTTACCATAGCACCATTGCT	
     11781	    26	 100.0	    34	..........................	ATTGGAGCCATCCTGTCGCCATATCACCATTAGC	
     11841	    26	  96.2	     0	...G......................	|                                 	
==========	======	======	======	==========================	==================================	==================
         3	    26	  97.5	    34	GTTTAGGTAGTACCATGAACCATTGT	                                  	       

# Left flank :   ACTCCGTGGAGCCATTTCGCAAGCTAGCACCCTGGCAGAGATTGAAGCCCTCTTGCAATTGGAGAAGGCTTAATAGTTTAAAACCCGTAACTCTCTTAAAGAGCCTCTTGAATGCCGCCATTCTTTCCTCATCAAAAAAACTCCGTAGTCTCTAGCGCTATAAATCCGGCTAGAGATTACAGAGTTATTTTTTAATCTAAACTTCCTACAAGGGTATATTATCTACTGAAAGGATATGGTATTTGTAGGGAATACTTTAAAGAGTTCTTACAGGAAGTCAGTATTAACTAGTTATATTAAGTTTAGTTTACCCATTCACCATTGGCATTGACTCTATAGCTATCTACAGTTGTGTTGACTGCAAGGGCACCTGAGCCATTGACATAGTACCATTTATCTGATACTTTGAACCATTGGCTTGCTTTCATAGCACCTGATGCTTCAAGATAGTACCAGGTATCTCCATCTTTCACCCAATCTGTTGCCATTGAACCGTTAGC
# Right flank :  A

# Questionable array : NO	 Score: 2.55
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTAGGTAGTACCATGAACCATTGT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.54%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-1.00,-0.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [1-1] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [56.7-1.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.64,0   Confidence: HIGH] 

# Array family : NA
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