Array 1 319417-320441 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NAYL01000015.1 Streptococcus agalactiae strain NNA007 151, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    319417	    36	 100.0	    30	....................................	TAAGACTACTGTTATTGTCATTCACAAGAA	
    319483	    36	 100.0	    30	....................................	TGAGCGTGTCTCATGATTTTAAGGAATTTT	
    319549	    36	 100.0	    30	....................................	AACAGAGACAGGTAGACAACCGCATGCTTT	
    319615	    36	 100.0	    30	....................................	TGAAGCTATTGTCTTAAACTCAAAAACTTT	
    319681	    36	 100.0	    30	....................................	TGATTATAGTTTAGAAGCTCCTTACGATGA	
    319747	    36	 100.0	    30	....................................	TCCTAAATCACTAAAATTTCCGATAATAGA	
    319813	    36	 100.0	    30	....................................	GTTTTCAAAATTGATAACTACTTCATCTCC	
    319879	    36	 100.0	    30	....................................	ATCTAGTTTTGGACGATTTAGGTGCTGAAA	
    319945	    36	 100.0	    30	....................................	AAACCACTTGATGCTGTATCTCTCATAAAA	
    320011	    36	 100.0	    30	....................................	ATTGTGATACAGATAGTTTATACCTAAAAA	
    320077	    36	 100.0	    30	....................................	TGGTTTAATACTGTAAATTGTTCAATATCA	
    320143	    36	 100.0	    29	....................................	CCCTCAATTTATTGACATTATTAATATAA 	
    320208	    36	 100.0	    30	....................................	TTATTCTCAACAGTAGCTAAAGTTGCTTTT	
    320274	    36	 100.0	    30	....................................	AAAAAGAGCCAGAAACTCAATCAGAAGAAA	
    320340	    36	 100.0	    30	....................................	TGGTGTTGGCTGTTCTGGGATGACTACGTT	
    320406	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CTTTAATATCGTCTATATAGATTCCTGGACGGTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTAGCAAGCTAACGAAATCATCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATATAGAGTTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATATGAAAGACTATAATTCCAACCTTATTGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATGGATCTCACCTATTA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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