Array 1 110743-111360 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABCJ01000005.1 Caminibacter mediatlanticus TB-2 1103207000290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 110743 36 100.0 35 .................................... TCCTTGTTAAAGTCTTGTTAAAGTCTTGTTAAAGT 110814 36 100.0 37 .................................... TCCCCTATTAAAAGGTTAATATTCTTTGGGGAGCTTT 110887 36 100.0 38 .................................... GCGGTCATAAATATCTCTATTGTTATGATTACGAAGAT 110961 36 100.0 41 .................................... TTAAAAAATTTTACTCTGGAATAGAGACGATTTTTAAGTCG 111038 36 100.0 34 .................................... CCGTTTTCTTCATCTTCCCATACTTCTACAGCAT 111108 36 100.0 37 .................................... TCTACTAATAGGATACTCATAACACCTCCTTTTAATC 111181 36 94.4 36 ..........A..T...................... TTTTGTAAAACACACACTACACCTCCTTTTAATTAT 111253 36 94.4 36 ..........A..T...................... TTATCTGTAATTTTTTGTGTTTCCATTTCCCTTGTA 111325 36 97.2 0 .................................G.. | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 98.4 37 CTTACAATCCGACCGACCCGCTAAGGGGATTGAAAC # Left flank : TGGATTTAGGCATAGTGATAGGCTTTTGATATCAAAAATAATTAGATTTCATAAAAGAAAAAAGATAAAAAAAAGAGAAATTGAAAAATTTAAAAATCTTCTTCCAAAAAAAGAGATAGTAGAAAAATTATGCAATATCTTTTGGGTTGCAAAACTTATAAATATAAACCTTTCAATGCCAGATGTAAAAATTAGTAAAGAAAAAAATAAAATTATTATTGAAGGACCACATTTATATTTAGCAAAAGAGAGAAGTAAAAGTAGGGAATTATTTTTTGATTTAGAAATAAAAAATTTGGTATAATAATAAAAAGATGATTGAAAACTTAATGTTTTTTTAAAAAATGATGTTTTAAGTAAGATTTATTTAAGTTTGTTTAAGCAATTTTTAAGGTTTAAAATGCCATAATTTAGGGCATTTTAATTTTAGTGCCAATCGAAAATGAGTGTTTAAGCAAACTTTAAGAAATGAGATTCCCTAAATTTCGGGTAAAATAGCC # Right flank : CAAGAGAGATTACCTTTTTTAATTTTTCATTTTCAATTTTTATACTAATTTCAAATAAGTTTGTTACTTTAAAACCTATTATTTCAATACTTTTCATCATTTTCCATTGTCAATTTTTAATTAGTATTAGATTAAATTGAGTTAAAATGTTTAAGATTTATTTAGAAAAGTGTCTTATAGTAATTTAAGATATTCAATAATTTGAAAAGAAAAAAGAAAAGTTTATGAGTAGTTAAAATTAAAAACTTGCACCAAGGCTAAATTCAAATCTTTGTAGGTCATCTCCTTTTTGGCTTTTAATTGGCCAAGCCCAAATGAAACTAAGTGGTCCCATTGGTGTTATCCAATCAATTTGGAATCCATAACTACTTCTTGTAATGTTTAATTTATTTTCACCAACTGCTCCATAATCAATAAATCCAGTTAACCAAACCCTATTTTTTAAACTTAGAGGTGTTGATATTTCAGGTCCTGTAACAAACTCATATTTTCCACCTATT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTACAATCCGACCGACCCGCTAAGGGGATTGAAAC # Alternate repeat : CTTACAATCCAACTGACCCGCTAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 1 5962-6293 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABCJ01000009.1 Caminibacter mediatlanticus TB-2 1103207000277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5962 37 100.0 35 ..................................... TATTAAAATTACTTTATATTTGTTTCCTTTAATTA 6034 37 100.0 39 ..................................... CTACGTGGTCGTGACAGTATTTAGTTATAGTGGAATATA 6110 37 100.0 39 ..................................... CTACGTGGTCGTGACAGTATTTAGTTATAGTGGAATATA 6186 37 100.0 35 ..................................... TTTGTTTTCATACCCATTTAGGGTATTTTCGATTT 6258 36 86.5 0 .............................-G...TGC | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 97.3 37 ATTACAATCCAAACGACCCGTTAAGGGGATTGAGACT # Left flank : TAAAAGATGGATGATGTTTTTAAGATGGATGGTGAGAGATAGTGATATTGATTTAGGATTATGGAAAGGTATTAAAAAAAGTAATTTAATTATCCCACTTGATACCCATACTCATAAAACTTCATTAAAATTAGGTCTAATAAATAGAAAAAGTTATGATTTGCAAGCAGCAATTGAACTTACAAATAAATTAAAAGAATTTGATAAAAATGACCCTTTAAAATATGATTTTCTTTTATATAGAATCGGACAATTTAAATTACTTTCTTAAAATATTTATTTTTTGATATAATTATTGTTATAATTCTAAAAAGATGATTGAAAACTTAATGTTTTATTAAAAAATAGCCATTTAGGTAATATTTCTTTAAGTTTGTTTAAGCAAACTTTAAGCTTTAAAATGCCGTATTTTAGGGCATTTTAATTTTAGTGCCAATCAAAAATAAGCTCTTAAGCAAACTTTAAGAAATAAACTTTCCTAAATTTCGGGAAAAATAACT # Right flank : CCGTTAAGAAAACGACCACTGCTTATCGTTTTTAGGCTCACACGGCGATGTCGATGTTCCGAAGGAACCGACAGACGCTTGAGACTTTTTCAACCGGTACCCTGCCAGGTTTTGCCACAAGCGGCATAAAACCTGTCTTCACTTTGGCCGAAAGCAAAGCAGTTTAATTTGTAGCTTAGACTATCTCGTTCATTATAGTGTTTGACACCAAATAGAAAAAATTTTTATACCAATCTTAACATACATAAGCCATTTACTATTTAATCAGTGTAAAAGACTTAATTAGGATAAAATGAAAAAGACAAGAAATTAGCCTTGTCTTTCTTTAATAATTTCTTCTGCAATATTATTTGGGACTTCTTCGTAGTGGTCAAATACCATTGAATAAGTACCTCTACCTTGAGTCATACTTCTAAGGTCTGTTGAGTATCCAAACATTTCAGCAAGTGGAACAAATGCTGTAATTTTTTTAACTCCGTGTTGGTCTTCCATTGAATTTA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTACAATCCAAACGACCCGTTAAGGGGATTGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 14043-14228 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABCJ01000009.1 Caminibacter mediatlanticus TB-2 1103207000277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================= ================== 14043 31 100.0 49 ............................... TTGAGACTTTTGAAACTTCTTCAGCTTCAAAAGCTATTGCCATATCATT 14123 31 100.0 44 ............................... TTGAGATTTTTAGATCAATCTCTATTCTCAACTTAATATGAATA 14198 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================================= ================== 3 31 100.0 47 TACAAATTACATAACAGACCCGTTAAGGGGA # Left flank : TAATAATTCATCTGATAACTTTTTTACATCAATATCTATTTTATCTGTTTTAAGATAAATTTTAATATTTTGAGGGCTAAAAATATCTTCAAATCTTTCTTTAAACACTAAATCCATTTTCCAACTTTTTTTGACTATTTTTTGTAAATTTTAACATTTTTTGTTAGAAAATCAATGTTTTTTTTTATATTGATTAATGCATTTTCCAATTTTTCATTTTCTTGATTTCTAAAAGTCCCATAAATTCGGTATTATAAAACTTAAATTTTCCTTAAAGTTGGAAAATAGATTCTTTTTTGCATTTTTTACATTTATTTTCTAACTTTTACATTTTTAAAAATCCCTAAATTTAGGGGCTTTAAGCTAAATTTAAGCAAAAATAAACGTTTTTTAAAACTTTATTTTCCAACATTTTCCAACTTTTTTGACATTTCCCATAATTTAGGCTATACTTTCTTTAACAAAATGCTCTTTGAAAACTCAAATGTCGATTTTTGGGC # Right flank : AGGAGAGCCGTTAAGAAAACGACAACTGCTTGTCGTTTTTAGGCTCGCACGACGCTTGTGATGTTCGCTTGCGAACCACAAGACGGCAGAGACTTTTTCAATTGGTACCCTGCCAGGTTTTGCCGCAAGCGGCATAAAACCTGTCCTCACTTCGGTCGGAAGCAAAGCAGTTTGCTTCCTAACCTTCGGTTACCTCGTTCGCCCGTTAAGGGGATTGAGACAAATCTCTTTTTTTTATTTCTTTTTTTTCATATTCATAAACAAATTACATAACAGACCCTAATAAGGGAAGGAGATCCGTTAAGAAAACGAAAACTGCTTGTCGTTTTTAGGCTCAGAGGAGGGATATTAAAAGACATATTTTAACAATTTTACATCTAAGATTTTTCAGAGAAATCGAGAGACTAATAATAAATCTAATTAGAATCAGAAAAAATTAAAATTTCCTAATAAGAAAAATTATGTAAGATATACAATAAAAACAATAGTTATAAAGATAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACAAATTACATAACAGACCCGTTAAGGGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-1.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 26352-26679 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABCJ01000009.1 Caminibacter mediatlanticus TB-2 1103207000277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 26352 36 100.0 36 .................................... CCCATATTTTATCGTTTTCAATCGAACGGGAGAGAT 26424 36 100.0 34 .................................... ACATATTTATCTTTTAAAAATTCTTTTAAATTTA 26494 36 100.0 39 .................................... ACGATTTTTAAGTCGTTTCTATTCCAATATTCCAATTCT 26569 36 100.0 39 .................................... CAATGAATTGGGACGTGGTCTATGTTAATTATATAAAAT 26644 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 100.0 37 GTTACGAAACAACCGACCCGTTAAGGGGATTGAGAC # Left flank : GATAAATAAACTTTTCAACTTTTATAATATGACACCTATCCTTTTCTAAATCAATAATTTTTGATAATTTTTTTGCAATTTCAATCGCTTCTTTTTTATCAATCAAACACTCTAACGCACTTTTTTGACCTCCAAAAGCATAAGAATAAACTAAATTTTGAACTTTTTTTCTTCTTTTATCATCTGCAATATCATAAGCAATCAAATACATCAAAAACTCCTTTATAAAATTTTAATAAAATTAAAAGACAAAAAAAGTCGTTAAAAAAATTTTGTATTTTTTATTTTTTTGTTATAATATAGAACAAAAAAGATGATTGAAAACTTAATGTTTTTTTTAAAAAATGCCGTTTTAGATAAGATTTCTTTAAGTTTGTTTAAGCAAACTTTAAGGTTTAAAACGCCGTAATTTAGGGCACTTTAATTTTAGTGCCAATCAAAAATAAGCTCTTAAGCAAACTTTAAGAAATAGACTTCCCTAAATTTCGGGCAAAATAGCC # Right flank : CGTTTTAGTCTGTAATGTAACATAAGGTATTCCAATATATGTTAAAATCTAAAAACCAGTTAAAAGGAAGGAGAGTTTTTAAGAAAATGTCAACTGCTTGTCGTTTTTAAGCTCGCACGAAAGGAACGATAAGTAAAAGATAACTACTTATCTTTTGACGTTCCGCACGGCAAAAGTTATGTTTTAACAACTTTACGCCTGTAATGTTCCGAAGGAACTGACAAACGCCTGAGACTTTTTCAATCGCTACCCTGCCATTTTGCCGCAAGCTGCATAAAACCTGTCCTTATAACAATTCCAAATAAGTTAGTTACTTTAAAAATCTTTAAAACTCCTATTATTTCACATTTTCCATTGTCCATTTTCAATTTTCAATTGGTATTACTTCTAACTCTTTACTATCACACTTTCCCCATTTCCTCTTTTTTGAATTATAATCTTATCTGGCATTTCACTTTGAAGCAACTCAACATGAGAGATAATTCCAATCATCTTTTCAC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGAAACAACCGACCCGTTAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 10-1421 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABCJ01000029.1 Caminibacter mediatlanticus TB-2 1103207000228, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10 30 100.0 34 .............................. TTGTCTCTATTTTACAAAATAATCAACCTGTTGT 74 30 100.0 37 .............................. ACACTATGTCTTATACAGCAAGTGCAATTGCTTATAT 141 30 100.0 34 .............................. TTGTCTCTATTTTACAAAATAATCAACCTGTTGT 205 30 100.0 38 .............................. ATTTAAGAAAAGGAGAAAAAATTGCAAAGCTTGACCCG 273 30 100.0 34 .............................. ATAAAATTTTTGCTAAGTTGGATGATGTATTTGT 337 30 100.0 38 .............................. AGTTGAGGAAGTAACTCCATTTGATATTGAAAAAATTA 405 30 100.0 36 .............................. ACAAGTATCTTGTCCTGATGGTGAAGATGTTTTGAT 471 30 100.0 37 .............................. GCTAATTCTATACCTCTTAAAAACACTATTCCAAATA 538 30 96.7 35 .............G................ GAGTCTCCTATTGATATAGACGAGGTTCTTGATTG 603 30 96.7 35 .............G................ TTTTTATAGACAAATTATCAGCTATTTCTAAAAAT 668 30 96.7 34 .............G................ ATAAAATTTTTGCTAAGTTGGATGATGTATTTGT 732 30 100.0 38 .............................. AGTTGAGGAAGTAACTCCATTTGATATTGAAAAAATTA 800 30 100.0 36 .............................. ACAAGTATCTTGTCCTGATGGTGAAGATGTTTTGAT 866 30 100.0 37 .............................. GCTAATTCTATACCTCTTAAAAACACTATTCCAAATA 933 30 96.7 35 .............G................ GAGTCTCCTATTGATATAGACGAGGTTCTTGATTG 998 30 96.7 35 .............G................ TTTTTATAGACAAATTATCAGCTATTTCTAAAAAT 1063 30 96.7 36 .............G................ TTTAGAGCAAAAAGTTACTCAAAAAAATCAAAAAAA 1129 30 96.7 35 .............G................ GAAAAACAACGACAATTTATTCAACGCTCCTCTCT 1194 30 96.7 36 .............G................ AGCTAATAAAAAAGATAAAAGAAATCCTGCTCCTAT 1260 30 96.7 35 .............G................ AGTAGCAAAATGGAAGAAACACAATACCAATATGT 1325 30 96.7 36 .............G................ ATTATAATAATAATTACCAAAATAACACTTACCATC 1391 30 96.7 0 .............G................ | T [1419] ========== ====== ====== ====== ============================== ====================================== ================== 22 30 98.4 36 GTTTCCAAACACTACGTGTATCGGTTGAAT # Left flank : AAATAATAAG # Right flank : ATTGTTTAAAGTAATAGCAAAAACATAGTTAGTTTCCAAACACTGCGTGTATCGGT # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACACTACGTGTATCGGTTGAAT # Alternate repeat : GTTTCCAAACACTGCGTGTATCGGTTGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 154052-153562 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABCJ01000001.1 Caminibacter mediatlanticus TB-2 1103207000283, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 154051 30 100.0 36 .............................. GATTTATATCAAGAAGTAAAAAGATTAGAAGAATCC 153985 30 100.0 38 .............................. AAAGAGTTAGTTTTAGAACTTGATGATAAATATGCTAT 153917 30 100.0 35 .............................. TGTGTGTCATTATGTTCTATTTTTATAAAACTTAT 153852 30 100.0 36 .............................. CAAGTAAAATTAGTCCAAATAAGTTATATAAAATAT 153786 30 100.0 35 .............................. AATATTCAACTTAATTGTTGTGTATCTATTACTAC 153721 30 100.0 35 .............................. GAATTTGAAAAAATCATTATAAATAAAATAAATAA 153656 30 100.0 35 .............................. AGAAAAACAAGTAACAGTACCATTAGAATCAATAA 153591 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 100.0 36 GTTTCCAAACACTACGTGTATCGGTTAAGG # Left flank : CGTTTCCTTTTCCTGTTGCACCATGGGCTACTGCCTCAGCTCCAACTTGTTTTGCTATTTCTATTTGTCTTTTTGCAATTAATGGTCTTGCAATACTTGTCCCAAGTAGATATTCTCCTTCATAAATTGCATTTGCTCTAAACATAGGAAAAACATAATCTCTAACAAACTCTTCTCTTAAATCTTCAATAAAAATATTTTCTGGCTTTACTCCAAGTTTTAGTGCTTTTTCTCTTGCTTCTTCTACTTCTTCACCTTGACCTATATCAGCAGTAAATGTTACTACTTCTGCATTATATTTATCTTGAAGCCATTTTAAAATAACACTTGTATCAAGTCCACCACTATAAGCTAATACAACTTTCATAAAGATCCTTTTTTATGAAATTATACTATTTTTTATGGAATCTTTTTTAGATATTTAGTAGTTTGTTAATATTGAGAAAATAATTATTACAGGTACTTTTTATTGATTAATTTTATTAAGTAAAAACAAAAGA # Right flank : GCATGAGATTTCGGGCTTTTTAAAAGGTTGTTGTCCTAATTTTAGGGATTTTCCAATCATTTTGAAAAAAACAATAAATTTTCAAAAATCACTTTATTTTTGCCATTATACCGAGGTTTTGAAAAAAAATCAAGAAAATGAGGTTGGAAAAATTATTTATAAAAATTTTTTAATATAATTCCAATAAAAAGGCTTACATTGAGAATTGATAAATTTTTAAATGCTGTAAATATAGTAAAAAGAAGAGCAATTGCTACTGAAATGTTAGATGAGGGAGTTGTTTTTGTTAATGGAAAGAAAGCAAAAAAAAGTAAAGAAATAAAAATTGATGATATAATAGAAATAAAATATTTAAATGGAAGTAAAAAATACAAAGTATTAAAACTTCCTGAGAGTAAAACTATTCCAAAATCAAAAAAAGATGAATATGTTAAGGAGATAAAATGAGATTTTCAAGATTATTTTGTTATACACTAAAAGAAGCTCCAAAAGATGCAGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACACTACGTGTATCGGTTAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 175801-176290 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABCJ01000001.1 Caminibacter mediatlanticus TB-2 1103207000283, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 175801 30 100.0 36 .............................. AGAGGAGTTAAAAAGAATTATAGAAGAGATAAATTT 175867 30 100.0 36 .............................. AATATATGATTTTGAAACCTTCGTCAAATACTTTTT 175933 30 100.0 37 .............................. TGTTTTACCTACACCTGGCGCCCCAAAAATAAACATA 176000 30 100.0 35 .............................. AGTGATATATTTTATTGGCGTGTTGAAGTATATCC 176065 30 100.0 34 .............................. TAGCTTTATTTGTTATAACAATTTGATTTAAGTA 176129 30 100.0 36 .............................. AGATTTAAGAAAGCTTAAAAAGATTTATAATGTTAG 176195 30 100.0 36 .............................. TCCAAATCACGATATAAAAAACATTCCTCCATATGA 176261 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 36 GTTTCCAAACACTACGTGTATCGGTTAAAG # Left flank : ATTATCCATCCCAGCAGTTGTAAAACTCATAACCAAATTATCTCCATACTTATCAACAATAAGACCAGGCAGTAAATCAGCTTCTGAGTGAATTAATCGATATGAGTTTGAGAGTATATTTTCTCTTTTTTTAATAGCCTTCTCAATTCTTTTTTTAAAAAAATCTTTTGTTATTTTTGTTTTTTCAAAATTTATAACCCTTGCAGAAATTTTACTTAAAGGATTAAAAAATGCAGTAGCTACATATTCATCTCTATATACCAAATCTACAATATCCCCAGCATTACATTCAGGAAAATTTACTATCTCATTTTTATAAACCCAAGGAAATCTTCTTTGAAGCTTCTTATAACTTTCTTTATTAATTTCAACTCTCAAAAAAAGCCTTTTTTGAAAATTATATCAAAGATTAAGTAGATGTAAAGACAAAAGAAAAAAATATATTACGTGTATCGGTTGAATGCTGATGCAGAAGCAGAGAGAAAAATAATAAAAGCAAG # Right flank : GGCATGAGATTTCGGGCTTTTTAAAAGGTTGGTGTCCTAATTTTAGGGATTTTCCAATCATTTTTTAAAAAATAATAAATTTTCAAAAATCATTTTGCTTTTGCCATTATATCGAGGTTTAGAAAAAAAATCAAGAAAATGAGGTTGGAAAAATTATAAAAATAAATCGTTATCTTTATTCCCTAATGTAGTTTCTAAAAAAGAAGATTTGTTTTTCAATTTTATTATGCTTATAAAATCAAGCTCTTTATCTATAACTTCTTCGAGTTCTTTTTGTAATTTTAAAAGTTTAGAAGGAGTTATTTCTCCTCTAAAAACTGATTTTTGATGATGTGAGAGATATTTTTTACAAATTTTAAATACTTTACTAACTCTATTTTTGCCACTCTCACTCTCTTCATCTGCAATATCATACATCAAAAAAATATAATTAAAGTTATAATCTTTTTTCATCTTTTCTCCTTAATCAAAAAAGGCATAAATTCAGTATCATTTATTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACACTACGTGTATCGGTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 185554-186765 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABCJ01000001.1 Caminibacter mediatlanticus TB-2 1103207000283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 185554 30 96.7 36 ................C............. TTAACTATGTTTTTGCTATTACTTTTAAACAATATT 185620 30 96.7 36 ................C............. GATGGTAAGTGTTATTTTGGTAATTATTATTATAAT 185686 30 96.7 35 ................C............. ACATATTGGTATTGTGTTTCTTCCATTTTGCTACT 185751 30 96.7 36 ................C............. ATAGGAGCAGGATTTCTTTTATCTTTTTTATTAGCT 185817 30 96.7 35 ................C............. AGAGAGGAGCGTTGAATAAATTGTCGTTGTTTTTC 185882 30 96.7 36 ................C............. TTTTTTTGATTTTTTTGAGTAACTTTTTGCTCTAAA 185948 30 96.7 35 ................C............. ATTTTTAGAAATAGCTGATAATTTGTCTATAAAAA 186013 30 96.7 35 ................C............. CAATCAAGAACCTCGTCTATATCAATAGGAGACTC 186078 30 96.7 37 ................C............. TATTTGGAATAGTGTTTTTAAGAGGTATAGAATTAGC 186145 30 100.0 36 .............................. ATCAAAACATCTTCACCATCAGGACAAGATACTTGT 186211 30 100.0 37 .............................. TAATTTTTCAATATCAAATGGAGTTACTTCCTCAACT 186278 30 100.0 34 .............................. ACAAATACATCATCCAACTTAGCAAAAATTTTAT 186342 30 100.0 38 .............................. CGGGTCAAGCTTTGCAATTTTTTCTCCTTTTCTTAAAT 186410 30 100.0 34 .............................. ACAACAGGTTGATTATTTTGTAAAATAGAGACAA 186474 30 100.0 37 .............................. ATATAAGCAATTGCACTTGCTGTATAAGACATAGTGT 186541 30 100.0 34 .............................. ACAACAGGTTGATTATTTTGTAAAATAGAGACAA 186605 30 100.0 35 .............................. TTATTATTTTAAATTTAGAGTAAACCCTGATGAAA 186670 30 100.0 36 .............................. AGCATTTAATCTACTGCCTTTTTGTAATCTTAATTT 186736 30 76.7 0 C.....G.A......A.T.......T...A | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 97.2 36 ATTCAACCGATACACGTAGTGTTTGGAAAC # Left flank : TTTACTTCTCTAAATTTAATACCCTCAACTCTTAAAAACTTATCTTCCCACATAATACTACTAACAAGCAAATCAATATATTTTTTATCAAAACTTCTAAAAATAAAATTAGTTTTACCCTCATAATATCCATTTTTTGGATTATTAAAATTTGAAAAAACATATTTAAATTTATTTTCAAGATGTGAAGTATCACCTTTACTCATAAAATATGAAGCTAAAAATTTCGATATCACTTCAAGTGAAGACTTATGATAAATTCTATGCTTTAATTCAACATCAATTTTTAATTCAAAATATCTCATTTGACCCCTTTTTCGTTAAAACATTTTAACATATTATTAATTTTTTTTCCAACCTACTTTTCTTGATTTTTTTTCTAAACCTCGATATAATGGCAAAAGCAAAGTGATTTTTGAAAATTTATTGTTTTTTTAGAAACGGTTGGAAAATCCCTAAAATTAGGACACCAATCTTTTAAAAAGCCCAAAATCTTATGT # Right flank : ATCGAATTTTTTTCTTTACATAAATAATCTATATACCTTTAATCAACACGTAAAATAAAAGTATAAGAGTATAAGAAAAATAGAAAATATGAATAAATTTTGATAGATTATAAAAAAATATTTAAAAAAAATCACTCTAAAAGCTTACTTCCAGGAGTAATATAATATTCTGCATTTTTTATTATTTTTTGCCCTTGTGTAAAATCAAATTCTGGTAATATTTCTAATTCTCCTTCAAATTTTTGATTATTAAATTTTAAATAGTTTTTAAGTGGATTTTTATAATTATTGGTTTGATAAATTCCTTTTATAAGGTTGCAGTTATAATTTTTCTCTTTAATACTTTCCAATTTCATCAATCCAAATCCATATCTTACATCACCACCAATATATATCTTTTTTATTTCATCTAAATACTCTTTTTTGCAGTTTATATATCCAACCCACTCTATATTATTTGGATATATTAAATCTATCTCATGTAAACTTTCATCTTTTGC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAACCGATACACGTAGTGTTTGGAAAC # Alternate repeat : ATTCAACCGATACACGCAGTGTTTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 194147-194901 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABCJ01000001.1 Caminibacter mediatlanticus TB-2 1103207000283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 194147 30 100.0 36 .............................. ATATGTTAATTTAAATTATATTGATAATCCTGACTA 194213 30 100.0 36 .............................. ATTGTAGAGCCTTGGAAAAGAGAACATTTAATAAGA 194279 30 100.0 36 .............................. CAAGGCAAAAATTCCATCTTGACCTCCTTTTCTTAT 194345 30 100.0 37 .............................. CACTATAAATACAATTATTACAAAATTTAAAACAATG 194412 30 100.0 35 .............................. TTTCTAACAAAAGTGCAACCCATATTGCAATATTT 194477 30 100.0 35 .............................. ATTAGAGCATAGAATTTAACAGGATTATTATATTT 194542 30 100.0 36 .............................. CACCTTTAACTTTCACTTCAACGAGTTTAATTCCAT 194608 30 100.0 36 .............................. TTGGGTATTTTATATTTATTTTCCATTTTGTAGTTC 194674 30 100.0 38 .............................. TCTATTAATTGTTTTATTTTTACTAACCTATTACCATT 194742 30 100.0 35 .............................. AGGACAAATTGCAAGACTTGAAAACGAACTTGCTC 194807 30 100.0 35 .............................. TTGCTAACATAAGGCATTACATACATCTCAGCAAA 194872 30 80.0 0 ................T........ATTTT | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 98.3 36 ATTCAACCGATACACGCAGTGTTTGGAAAC # Left flank : CCAAAAATTTTAGAAGTTGTAGTAAGAGGTAAATTTTTTATAATGTACTCTTCTATATCTGATATTTCTTTATCTTTATATTTATATTTTTCAAAAGTTTTGTTTCGAATTTTTTCAAAAGTTTTATAATCTAAACTTTCATTCTCTTTTACTTCAATACCTGCAAAATAGCAATATACTTCAAACCAAAATCTTAAACTTCCAAATATTGAAGCTGGTTTAAGCTCTGTACATTCTCCATTTATATCACCTGTCCATAAAGGTGTAACTGTTTCAAATGTAACTGTTAATTCTTTTTTACCCATTTTATCAACCTTTCCTGATACTTAATTTTAACAAATTATTAATATTTTTCCAACCTCATTTTCTTGATTTTTTTTCTAAACCTCGATATAATGGCAAAAGCAAAGTGATTTTTGAAAATTTATTGTTTTTTAGAAATGGTTGGAAAATCCCTAAAATTAGGACACCAATCTTTTAAAAAGCCCGAAATCTTATGT # Right flank : TCAAACCTATGTATTTTTAAGAATATTTATTTTTTTTATAAATTAAAAATATCTGTCACTTTTTTAATCAAAGAGACAAATTTTTATTCAAATTAAAATTAAAAAAAATATATAAATTTCTAAAGTTTTAAAAAAAATTACCGATTATTTTTTGAAACCAAAAAAGGAGTTAAAAATGGGCTGTTAAACTTCTAAATATTTCCCCTCTTTTTTAACATAATCAATTAAATGTTGATAGGTTTGGTTAGTAGAAAGTGTTTTAGCATCCCCGACAATAATTAGCTTTCTTTTTGGTCTTGTTATTGCAACATTTAATCTTCTAATATCATCTAAAAATCCTATATTTTCTTTTTCATTAGCCCTAACAAGACTAACAATTATTATCTCTTTTTCTCTACCTTGAAAACCATCAACTGATTTTATTTCTATTCCTTCTATTTTTTCATTTTCCATTAATTTTTTTATATATTCTTCGTGGTCTTTATATGGAGTAATAACAC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAACCGATACACGCAGTGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //