Array 1 1177-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJL01000006.1 Acidithiobacillus ferrianus strain MG Contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1176 37 100.0 34 ..................................... GCCAGCAGCACATCGTCGTGCTCACTGGCCGACA 1105 37 100.0 35 ..................................... AAATGAATAAAATTAGCATTAATATCCCTACACAA 1033 37 100.0 34 ..................................... CTTATTTTAGCCGCTCAACTGAATGCGGCAAAAA 962 37 100.0 34 ..................................... ATACCTTGCCAGCACGTTCAACGCAGCATTGTGG 891 37 100.0 34 ..................................... ACCACAAACGTGCCCTCGCCGGACGTGCTCCAGT 820 37 100.0 33 ..................................... ACTCCCTACAAGGAAGTCCGACGTATTCTTCTG 750 37 100.0 35 ..................................... TCTTTTTGTCAAGGAGCGGTCAAATACGGTGGATT 678 37 100.0 34 ..................................... CGACCATCCCTGGCGCTGATACGGGATCATCATG 607 37 100.0 34 ..................................... CCGCGAATGGAGAAAGCACCACATCTCCTGGATT 536 37 100.0 34 ..................................... CGGTGACGGATATCGGCGTGGAGGACGTGCAGGC 465 37 100.0 35 ..................................... CTATTCCCAGTGCAGGCATCTACCCTCATGGAACG 393 37 100.0 35 ..................................... GGATACGACGATGAGGATCTGAATGCGCTTGTCAG 321 37 100.0 33 ..................................... TTAATTGCAACCCAAGAACGTCATCCGAATGCG 251 37 100.0 35 ..................................... TCTAGCTTTGAACTGCGGCCCTGGTGTATATTGAA 179 37 100.0 34 ..................................... TCAATTGCCATATCGTATATCCCACAGGTAATAC 108 37 100.0 34 ..................................... GTATGTACGCAGCGACAGGCAGATCACCGCCTGG 37 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 17 37 100.0 34 GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Left flank : GCCATACCTGAGCCGCTGAGGAGGCGTAATCATGCTCATCATCGTCACTTACGATGTCTCTACTGAAACAGCGGCGGGGCGCAAGCGCCTGCGCCGCGTGGCCAAAGCCTGCGAACGGGTGGGCCAGCGCGTGCAGAAATCTGTTTTTGAATGTCAGGTCAATCAAATGCAATACGAGGCTTTTGAGCGCACGCTGCTGGCGGAAATAGACGAAGAAGAGGATAATCTACGCTTCTATCGTCTCACAGAACCCACCGAACTGCGTATCAAGCAATATGGAACCTTCCGATCTATCGACTTCAATGGTCCCCTCATGGTTTGATGCGCGAACCCGGATCGGCGTCTCAAAGCCCGTCCTTTCGCGCGCCGCGTATCTTCCTGTTCTATCATCGTTTTTATTAGAAGTCCTTGGGGCTCTTATAGGTTTTCAGGCGGCCTTATCCGCCATTCGCGGTAAGTACAAAGAAAATTGTTCATTAACAATGTGTTGCAACAATGCA # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.50,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 1 34-1921 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJL01000008.1 Acidithiobacillus ferrianus strain MG Contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 34 37 100.0 34 ..................................... TCCGCTTTTATCCACACTGCGTCAGTGGCATAAA 105 37 100.0 34 ..................................... GAATATCCATGAGGCATATTATATAGCGCAACGC 176 37 100.0 34 ..................................... CACTCGGCAACAAAAGCGGCCTTGAGTTCTTCTT 247 37 100.0 34 ..................................... GTAGATGTTGCACGCCACCCCTGATGCGATGACC 318 37 100.0 34 ..................................... GACTCGGTGCTGACCGCGCTGTCGCGGCTGGCGC 389 37 100.0 35 ..................................... ACAGCAGGATTCTCCCATTGCGATATGGCGCTACG 461 37 100.0 34 ..................................... GCGCGTCTCGATGGCGAGCCGGAGCAGGTCATAG 532 37 100.0 34 ..................................... GCCGCAATGTCGAGATACATATCTGCCATCGTTC 603 37 100.0 34 ..................................... AGGTGTTTTATGACACCATCAACGCTGAGCAGGA 674 37 100.0 34 ..................................... GTCGCGGGAGTGATGGGTGCGCTAAGTGACGGAT 745 37 100.0 34 ..................................... GCGGCATGATCGAGGACGCTCTCAAAGCCCGCTG 816 37 100.0 34 ..................................... TGACTCAATCATGATGGTCCATGCGCCGGTTTTT 887 37 100.0 35 ..................................... CGGCTGTACCTCTCACTCAAGCAGCACATGGATTT 959 37 100.0 34 ..................................... GTGCTATTGATTTCACAGATATGCCCTGACCGAG 1030 37 100.0 35 ..................................... ACGAGGAGGGAGAACGAATGAACCTCACCGAAGAA 1102 37 100.0 33 ..................................... GCATCAATCTCAATGATGGCTATGCGACGCTGC 1172 37 100.0 35 ..................................... CTTGCGCATTCTCCGTAAGGTCGATATGGATATTT 1244 37 100.0 35 ..................................... ATGCCACCCGGTATAAAGGTGATGCGTCTGCGCCG 1316 37 100.0 34 ..................................... GCGTATTGCGGCTCAACTCTGCAGCACCACAGGG 1387 37 100.0 34 ..................................... TCACCTGCTTGTCGTTTGCGTAAGCGATGCCCTG 1458 37 100.0 34 ..................................... ATCCTCCACGAATATCATGCGCGCCATGTCTTCC 1529 37 100.0 34 ..................................... TTGCGGACCTGAAGGATTCCTTCACTTTTCGCCT 1600 37 100.0 34 ..................................... AAGCGGTAGATTGCGGACAAGTAGGCGGTAACAG 1671 37 100.0 34 ..................................... TTGCAACGCCGCGATAAATGCTTTGCGCTCACTG 1742 37 100.0 35 ..................................... CATAGGGTGGCGGGTGGAATGCGCGGACTGTGAAT 1814 37 100.0 34 ..................................... GGAACATGGAGGGCGTGGAGCATGAGGCGTATCC 1885 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== =================================== ================== 27 37 99.9 34 GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Left flank : TTGTGCGCTGTACATGGGGTGAGATGGCCGCTGG # Right flank : ATTATCGGCCTCTGTTTTGCTGAACGCCTATATCCCGAAAGCAGGAGATCTGGGCTTGAAAGCACCGGTCATGAGACCATGGAGGCGCGAAAAGTTACGGCGGACCCTCCAGCGCCACCACGTCCACTGTCACCGTCTGTCCCTGCAAGCGCGTGTCTATCCGCCGTGCCGCTTCCTGCAAGAGCGGTACCCAGCTTTCCTGGCGGCGTTCAATGGGTGCGGAGATGCTGAGTCCGGCATTCCAGGGTAGATGGCCGCGAAGCAATACCCCTAGGCAACCTACACCGATCTCGGCCTCTTCGTTATCCAGGGCATAACCGCGTTCTGACGAGAGGCGGGCATTCTCCCAGAGGGAGGTGGCGTTGTTCAGGGTGTGCTTGGTCAGGGCGGGTAAACCCGTGCGGACCGCGTAACTCTGGACGGCGGTTTCACCCTCCAGCGCCAGCATCAGTTTGCCGACGGCCGTCGTGTGCAGCGGCGCGCGACTGCCGATGATTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCGCCCGGCTTATAAACCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //