Array 1 971690-971919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBM010000001.1 Clostridium botulinum strain KM84 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 971690 29 100.0 37 ............................. TTAGCTTTCAATGCCATAGCCATAGCTTTGTTACTAT 971756 29 100.0 37 ............................. TTTATTTATCACCTTCTTTAATTGTATAAATGATACT 971822 29 100.0 38 ............................. TAATATAACTTTAATAGTATGATAATCTGGAACTATTT 971889 29 96.6 0 ........A.................... | TA [971913] ========== ====== ====== ====== ============================= ====================================== ================== 4 29 99.2 38 GTTGAACATTAACATGAGATGTATTTAAA # Left flank : ATGCTGAAAATATGGCTAATGCTATTGTTAAAGGACTAGTAGGGGAAACTACAAGCAATATCACACCAAGTCAAGCATCTACAAATAATAATAGTTGGATTAATTTAGATGGTAAAACAGGCACTATAAATACACTAAGTGGTGTAAATATTAGGGAAAAGAAATCTACATCTAGTAGAATATTAGGTGCTTTAAGTACAATTATATAGAAAAGAAGGAGATTGGATACACATTTATTATCCTCCACATGGTGGATATGTTTATGCTAAATATATAAGATATTAAATTTTTGAAGGTATTTCTATAATGTGAGTAACTTTTATTTTTCCAACCTACTTTAATTTTAAAATCTATCTTAACCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATCATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATGCTTTTATGATATCTTTAAAATTAAAGAATGGCTATTTTACTATG # Right flank : AAATAATAATTGTAGCTTACGCTGTAGTTATTATTTTTTTATTATTCAAAGGAATTTTCTAACATTTATAGAATATTAAATATAACGGCTTACCAATAATTTAGGCAACCTCCTTGCTTAAAAAAAAGAATCCCAATAAAAAGGGGTTCTTTTTGAATGGAATTTTCTATATATCTATATATTGGTGCTATGTTTTGGTCTATTCTTATTATATCCAGATGTAGAAAAATTAATCAATCAGAAATATATAATATGTAAATTTTTAAAGGTACTTCTGTAATGGAAGTACCCTCTTTTTTTATTGGAAAAATTATCATAATTTATATAAATTTATCATGAAAGCTATTGATTTATTATACTACACGTAGTATAATTATAATTGTAAGGAGGTGAGAAAAAAGGTGGTCAAATTAATAAGAAAATTAAAAAAGCTTGATAAACTACTGGGAATAGTCATCAAGCTACTGGTAAAAATAACAATCATAATAATGCCGCTTAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1845414-1845122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBM010000001.1 Clostridium botulinum strain KM84 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1845413 31 96.8 35 ........A...................... AGAAAATATCATTTAGATTATTGTTTCCTGTATAC 1845347 31 100.0 33 ............................... GGCATATTCTTTTCTGTTCTCACTATACCTTAT 1845283 31 100.0 34 ............................... GTATCAAGCTAATTTATATAAGTCTAAGTATTCT 1845218 31 100.0 35 ............................... TAAGTATATTCCAATACATTGCACCGCCCATCTGA 1845152 31 87.1 0 G...........................GCA | ========== ====== ====== ====== =============================== =================================== ================== 5 31 96.8 34 ATTGAACATTAACATGAGATGTATTTAAATT # Left flank : ATTTTGAATTTATTATTGTTGATTAAAGGAATAGTAAATTATTTCAACAGAGCAACAGGATAATATTTTTAACAAATACCTGTACAAAGTATCGTTCTATGGGAATGTCTATGAAAACTATTATTACACAATTTGGTCAGGAAGAAAATAATTATAAATTGATAGAAGAAAAAGAAGCAATGTATCAATTAGAAGCCTTAAAAAGGGCTAAATATTACATGAAGTTAACAGATGATATTTAAAAAAGTTCTTGTTTAGGTATATAAACAATTTTCACTTTAACCATAATAATTTCCATTTGTTTTTTAAGTATTAATTTAAGTTTTTCCAAGTGAATTCAATTTTAAAATCTGTTCTAGCTATTGACATTTAAGGCTTATAGCAGGTTTTTATTATGAATTTTTTAAAAAGCAAAATCACTTGGGAAAATTTCTACCAAGCCTTGTGAAATCAATAGTTATATGCTATTCTTGAAATTAGGGAATGGCTATTTTATTATG # Right flank : GAGAACCCAAATCTAAGATTTGGTGTGGATCGCTTACTCTTTAAGAATGGTACAGGGATTTTTATAAAACTAAACTATGCATTGTGATAATTTCTATGTAAATTATTAGATAAAGGGGGATTTTATGAAAAATAAAGTTACTAATAATTTAAATTTTGTTGCAGCAATATTGCTTGTAGTTGTGGCTATGTTAAATTTTTTTCAGCATAAAACATTGCTGGGAATTACATATATCTGTTCAGCAATATGTTTTTGTACACTTGAATTTTCAAAAAAGAAAAATGCAAATCATAAATAAATTTAATTTTAAAAACCTGTCTATTTAGGACAGGTTTTTAGTATTTAAAGGGAATAGATAAAATAGTTTTTTGTAGTCGTGTAAATATTGTATATTATTCTGTATTTTTGAAGGATTATCCATAACTCTGTAGAAGAATATTTGTGTAGGAAATATATTATAAAAATATGGAGGGAGCATTGTGGATAAATTTCGTAATATG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 3 1856188-1855963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBM010000001.1 Clostridium botulinum strain KM84 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1856187 31 100.0 34 ............................... TATTTAAAAAAGAGAACTTGGGTTTTATGTCTAA 1856122 31 100.0 35 ............................... CCATTTTTCTATCTAAACAAAGTTGGTAACAAGCT 1856056 31 96.8 33 ........T...................... CGATCTTACTATAAGTTTTCACTCGTTATTCTG 1855992 30 77.4 0 .C.A....G...T..A.........-....T | ========== ====== ====== ====== =============================== =================================== ================== 4 31 93.6 34 GTTGAACAATAACATGAGATGTATTTAAATC # Left flank : GATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTGCAAACCTATCTTAGCTCTTGAAATATAAGGCTTAAGGTAGGCTTTTTTTATATATTTATAAAATATTATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : GGGATATGATTTTTACATTAATTAAATAATAATCGTAGTTTATTATAAAATAGTATGGAGGTAGATTTTGAAGCTTAAAGTAGTATTTTTAATTAGTCTTATTATGTTTATTCTTGGTATATACTTTCCCAATAAGTCTAATTTTATGATTTTAATTGGAATATTAGGTGGAGGAATAATGGGATGTGTATAAGCATTTATAGGACATTCTAGAACAAATGTTATTAAAGATAAAGAGACTAGTTCATAAAAGAATTAATTTTTTATTATCTCATGAATTAGGCATGTGTTAAAGTTTTCAATATTAACATAAGCATTAAAAATTAATATTATATATGATAAAAATTACTAGAAGTCTTAGAAAAATCTAAGGCTTTTATTTTATGCAAAGATTTAGAATGGAATATGATAGGTAATTAATTTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAGTTATATTAACTAAAAGGTGTATGGTATAATA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 1857106-1857264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBM010000001.1 Clostridium botulinum strain KM84 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 1857106 25 100.0 42 ......................... AATAAAGGACAGGCTAGGAATATCTACAAACGCAGATTTAAA 1857173 25 100.0 42 ......................... TTATTTATTGGGTAGAACAAAAGAAAGATATAATTATTTAAA 1857240 25 96.0 0 .......................C. | ========== ====== ====== ====== ========================= ========================================== ================== 3 25 98.7 42 TACATCTCATGTTAATGTTCAATGA # Left flank : ATTAACCATAAAAAGTTTTGTTGTAATTTATATTGTTAAATTAATTTTAAAACATAATCTTTTTATTTCTAAACTAGTTATCAAGATTAAATTTCTTGGTATTCACATAGAACTTAATGGCAAAGAGAAAAAGCACCCATCCGACCAAGAATAGTGCTTTAATCTCTGAAATTTAATTATTAAATTCATCCAATAGCCCTAAAACAAAATAAATGTTCTAAGGATTGCTTAGTGCTCCAACACTAAGCTTTTCTTATTTATATTATATCAAATTTATATAAAAAATAAACACATATTTATATGTTTAATTTTTTAACTATAAAATTCTATAAAAAAACTAACTATAAAATTAGATTTTACTGCTTATAATTGATTCTCTATAGTTTTCTGTATAATATTTGCTGTTAGTTTTTCAATTTCAAAATGTTGAAAAACCTTGTCAATGAAAAACCACCTTAATTATTATTTGTTATCTTTTCATCGTTATTTGTTTTTTTCAG # Right flank : ATAGCAAAATAGCCATTCCTTATTTTTAAGAATAGCATATAGCCATTGATTTTACAAGGTTCTATAGAAAGTTTTCCAAGTGATTACGTTTTTTAATAAATACATAAAACAAACCTATTCTAAGCCTTATATACCAATAGCTAGAATAGGTTTTAAAATTTGTTACGCCTGGAAAAATTCAATTTATGAAACTCTTTATCCTACTCTCCAAGGAGTAAGCGGCTCACACCAAATCTAAGATCTGGGTTCCCTGCTTAAATACTATATTATTGATATGAAATGAAGCATTCCTCCAGATAATAATGCTACTACAGCACCTATTATAGTTCCAATACCAGCCCCTTTTATATGATGCCATGGACTCCTATATTCTTTATCCATATCCTCTGTACCAGGTATTCTAGTTTTTTTACTGTGACAAAAAATACATATATCTAAAACAATCATATCATAAATATTTACTACAAAAAACAAAGTAAATACATGAATGTAGGCTTTTG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACATCTCATGTTAATGTTCAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 1870898-1870471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBM010000001.1 Clostridium botulinum strain KM84 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1870897 30 100.0 35 .............................. ATTTTTATATATGGTAAGGAGGTAACAAAAGTGTT 1870832 30 100.0 37 .............................. CATACAATGTCTGTTTTACTTCTTCCCGTCTTGTTAC 1870765 30 100.0 38 .............................. CTGTCTGTTTTTGTTTCATTACTAGTAGAAGTATTTAA 1870697 30 100.0 37 .............................. GCTGTTAAGCCTTTTATGTTCTTAAACTTGTACGTAA 1870630 30 100.0 32 .............................. TGGAAGCATGGAGGGCTAGATTGGACAAGTAC 1870568 30 100.0 38 .............................. CTAATCCCATGTATTTTCCAGAGCTCAACTGGAAGAAT 1870500 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AATATTTATGGTGTCAGATACTGTGCGTCCATTATAGTAGTTTTTCCAGGTAAATTAAAAAATAAAAGTAATGTAAACTCAATCATATTAGTGGTTTATATAGGACTTTTTATAGAAATTTCTATTTTATAAAATCATCTGGAAAGCTTTCTGGAAAATTTTAGTATTTAAATGGGGGTGTGCTATTTTAGATTTTAAGGAATATTCATTTTACAGTGGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACTCAAATTTACAATTTGGTGTGAGTCACTTACTCCTTGGAGAATAAGAGAAGGAGTTTTATAAATTGAATCTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCCGTTGATATATAAGGCTTAGGATAGGTTTTGTTTTATATTTATTAAAAAACGTAATCACTTGGAAACCTTTCTATAAAACCTTGCAAAATCAATGGTTGTATGATATTCTTAAAAACAAGGAATGGCTATTTTACTATG # Right flank : ACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTATTTTTGGGTTATTGACTTGTAGTCTAAAGCTACACCATAAGAAGGTTCATTAAACACATGTGGAGGAACAAGTAATAGATACAGCACTTGCTATTGATGCGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTCCTAAGTTGTATTATAATCTAAGTAAATTATAAAAATATATGTTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACCTACAATGATAAAGTAGGTCCTGATTTTTATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 2019009-2018321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBBM010000001.1 Clostridium botulinum strain KM84 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 2019008 28 100.0 37 ............................ TTTGAATATAAATAGGCTTCATCATTATATGAAACGT 2018943 28 96.4 38 .............A.............. CTATCTAACCATTTTACTAAAGCTTTTGTACAATCCGT 2018877 28 92.9 38 .............A...........G.. TTTTCTGTTCCATACATTTTTTCTACTTTGAAATTTGT 2018811 28 100.0 37 ............................ TACTATGATAAGAATGGAAACTTACAAAGTGCTTTGT 2018746 28 96.4 39 ......A..................... AAAGGAACTTCTTTATATCCCGCATTATAATTAACTCGC 2018679 28 89.3 39 ......A......AG............. TCTTGTACGTCAACCCCTGCGGTTAAAACTAATACTTGT 2018612 28 92.9 38 .............AT............. AGTAATTCCGTCCCACCTACAGCAAATTTGGCATTTGT 2018546 28 96.4 38 ......A..................... TCCCATAACATCCATTTTAGCCATCCCCAAGATTCTGC 2018480 28 92.9 38 ......A......A.............. GGGTTTTCAAGGCCGAATTTTCGGCTACCAAGCTTAAT 2018414 27 85.7 37 ....T........-..G.......G... GGACTCATTGGGAATGTAATTGTGGATACTTTCATGT 2018350 28 89.3 0 .............A.A...........A | TA [2018325] ========== ====== ====== ====== ============================ ======================================= ================== 11 28 93.8 38 TGAACATTAACATGAGATGTATTTAAAT # Left flank : GGCAGATGCCATAGTAAAAGGGTTAGTAGGACAAACTACAAGTAGTACCCCAAGCAAACCATCTACAAACAATAATAGTTGGGTTAATTTAGATGGGAAAACAGGTACTATATGTACTCCAAGTGGTGTAAATGTTAGGGAAAAGAAATCTACATCTTCTAAAATATTAGGTGCTTTACCTAATGGATCAAAGGTACAATTATATCGTAAGGAAGGAGATTGGATACATATATATTATCCACCACATGGAGGGTATGTGTATGCTAAATATATAAGATATTAAGTTTTAGAGGTATTTTCCCTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATGGT # Right flank : ATAGTAATTGTAGCTTATGCTGTAGTTATTATTTTTTTACTATTTAAAGGAATTTTTTAACATTTATAGAATGTTAAATATAACGGTTTCCCAATAGGTTAATTATAGACATCCCTCATAATACAAAAGAACCCCAATAAATGGGGTTCTTTTGTTGTGGAATTTTCTATTTGGTGCTATATATTGGTCTATTTTTATTATATCTAGGCATAAAAAATTTAATCCAGGGAAATTATTTTTCCTTGGATTTATAATCAGTATATAATTTTTCTATAAACTCACCCATGGAGCAGTTGAGGTCTAAAACTTCTTTTTTCATTTTAAGCTTTATATCTTTATCTATCAATACCGTTAATTTTTCTCTATTCTCATTTTTAGATTGTTTTTTATTCATCTAATCACCTCTAATAAACTTATAAATTAATTATACTATAAGAATAATTAAAAGTACATAAAAAGGTGTTGACTTATACGGCAAAATGATTTAATATAAAAATATA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : TGAACAATAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //