Array 1 24672-23681 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDA01000017.1 Providencia rettgeri strain GPAT386_S2 15_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24671 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 24611 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 24550 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 24490 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 24430 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 24370 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 24310 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 24250 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 24190 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 24130 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 24069 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 24009 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 23949 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 23889 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 23829 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 23769 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 23709 28 89.3 0 ...T......A.........T....... | G [23683] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35081-33309 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDA01000017.1 Providencia rettgeri strain GPAT386_S2 15_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35080 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 35020 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 34959 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 34898 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 34838 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 34777 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 34717 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 34657 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 34597 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 34537 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 34477 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 34417 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 34357 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 34296 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 34236 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 34176 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 34116 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 34056 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 33996 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 33936 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 33876 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 33816 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 33756 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 33696 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 33636 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 33576 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 33516 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 33456 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 33396 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 33336 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //