Array 1 3162-1974 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUBE01000011.1 Pectobacterium polaris strain WBC9 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3161 29 100.0 32 ............................. CCATATGCTTCGACTAGGCGCTCGATGGCTCC 3100 29 100.0 32 ............................. CAGAGTCAATGAGCACGGCATCTAGCCCGAGC 3039 29 100.0 32 ............................. GCAACGAATATGCCAGAACCCTGTTGTTTCGG 2978 29 100.0 32 ............................. ATAAATTCACCATTCCAATCACCGCCCAGCCT 2917 29 100.0 32 ............................. CTAAGAACGCGCATTACCTCATCCGGCACCAT 2856 29 100.0 32 ............................. ATCAGATCTTCACGTTCGCGTGGTGTCGCTGA 2795 29 100.0 32 ............................. TTGTAAACCATAGCCGATGCAACACATCCGAG 2734 29 100.0 32 ............................. CCATTTATTTATAACCTTAGCCAGAACCCTTG 2673 29 100.0 32 ............................. AAATTTTAAACGTTACATTCATGGAGGATGAA 2612 29 100.0 32 ............................. GGGTGGCTGACACCACCGATCCTGATAAGTAC 2551 29 100.0 32 ............................. AAATTCGCAATGGTGGCGCGGAAATAGCAGAA 2490 29 100.0 32 ............................. TAGGCAAGCACATAGGCGTCAGAAGCCTTATC 2429 29 100.0 32 ............................. TCACGCGCCCGCTGATTTAAAAACATAGAAAT 2368 29 100.0 32 ............................. ATGGGTATCCCCTGGTTCCAGCTGAAAACAAT 2307 29 100.0 32 ............................. GATAAGAAAATTTATCTAGTTAACATTTTTGT 2246 29 100.0 32 ............................. CGCGTAATAATTTGGGTTTGGGTGGACTGGCA 2185 29 100.0 32 ............................. AGATTGGCATTAAACGCGGACTCCCCTTTTTC 2124 29 100.0 32 ............................. CTCGGGATGAGAGCGCTTATGTCGTTCAGCTA 2063 29 96.6 32 ................A............ AATGACTACCTTACTAAAACGGCAACAGCTAA 2002 29 89.7 0 ............TT.............T. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGTATTACGCCACCGCTCCCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTTCGCGCAGGCGTGTATGTCGGCGATACCTCACAGCGAGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTCATGGCGTGGGCAACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATATTTCCATATTGTCAACTTGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGATAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCGCCTCTCGTAAGGATTATGAGGATGCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 228738-228945 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUBE01000005.1 Pectobacterium polaris strain WBC9 5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 228738 28 100.0 32 ............................ AGTAACAACTAACACAGAACAATTGATAGTTG 228798 28 100.0 32 ............................ AGGTAATGCAAAGCCGCTATGCGCCCTGGATT 228858 28 96.4 32 .............T.............. CGAAGGGGCCGTGACGAGACAGCTTGCTGGCT 228918 28 92.9 0 ...........T.T.............. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATCGCTCTGCGCCAGATAAACGTTGGGCTGATGCACGTGTTCATCAAACATACCTCGGCAGCGCTAACGATTAATGAGAATGCCGACCCCACGGTGCGGCAAGATTTCGAGAGTTTCTTTAATCGGTTAGTGCCGGAGAATGAACCGTACTACCGTCATACTTATGAAGGTAGCGACGACATGCCCGCGCACCTGAAAGGCAGCCTGCTGGGCAACAGCCTGATGATTCCCATCACCAACGGACGCCTGAATATCGGCACCTGGCAGGGCATTTACCTGTGTGAACATCGTAACCACGGCGGCAGCCGCTCGCTGGTTGTCACACTCAACGGGGAATAGCTCCCGAAATGCGTCGCGCTAGCGACGCATTCTGATAAGTATCTAGCTGCCTGTACGGCAGTGAACCGCTGTGTTGTTATGGGCACTACGCAATGTTTCTAAGCTACCTATACGGCAGCTTAGAAAATAATCGACCTGAACCTTTGTTTCCTTCGTTT # Right flank : AATAAAACGTGCTGAAAATCAGCAATAAAAAACTCATAGGCAACGTGGCTTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCTTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCACTGGAGCAGGCACAGATGATTCTTGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGACTGATCAACCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTACCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //