Array 1 19180-18911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUY010000004.1 Erwinia amylovora strain Ea8-96 Ea_8-96_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19179 28 92.9 32 ......C...........G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 19119 28 92.9 32 ......C.................T... GAGCAATATATTCGATAGACGCTGATTTGCGT 19059 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18999 28 100.0 33 ............................ GCCAACGTTCACTGTCATTTAGCCACGCTTCGG 18938 28 75.0 0 .....A........G....TT...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 91.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCAGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : TGACTGAATGACTTCTCCCCTTGCCTGAAAGCATATTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGAAAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTAAAATTTTTTTGCTCAATAATTTCCAGAACTTTCATTTTGAGTTGGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGAATTTAATGAAATGCAAAGT # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30634-28644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUY010000004.1 Erwinia amylovora strain Ea8-96 Ea_8-96_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 30633 29 100.0 32 ............................. ACGCAACATCAGCCCAGTCAAAAGAAATAGGA 30572 29 100.0 32 ............................. GTTTCAGGAGTCTGGAGGGCAAGCCGATGCCC 30511 29 100.0 32 ............................. CTATTAATCCCACCTCCGCGCCTCCGTCGAGT 30450 29 100.0 32 ............................. CGGCAGCAAGACAGGAATCATTCATTGAAAGT 30389 29 100.0 32 ............................. AGCGTTAAGCCATTTTATGACAGTCTGGCGCA 30328 29 100.0 32 ............................. CCAGTGCGCCAGGCGAATGGGCCAGTGGGGTT 30267 29 100.0 32 ............................. GTAACTGCATAGTGCATTAAAAAATAGCTCAT 30206 29 100.0 32 ............................. GGAGCAATCTATGAATACAGAGCAGCTAAAAG 30145 29 100.0 32 ............................. ACAGCGATGGAATTAAAGGCTGATAAAAAAGA 30084 29 100.0 32 ............................. CCAGTATTGAGAGGTGGAGAATCCGTTATAGG 30023 29 100.0 32 ............................. GGTAATTCGCGGCGAAAAGGTTAGTGGCGGCT 29962 29 100.0 32 ............................. GAAGGTACCAGATCGGCATGACCACCGGGAAC 29901 29 100.0 32 ............................. CGTTGCGTGAGCAAAACGGTCTGGCAGGAGTA 29840 29 100.0 32 ............................. ACGGTAAACACGTAATTCACGCGGGCGGCATC 29779 29 100.0 42 ............................. TCTCTATCTGCATTGCTTTTTTGCGTTCTTTTGCGTTCTTTT 29708 29 100.0 32 ............................. ATTCAAACGGCTTGCCGTTCATACGAGGGCTA 29647 29 100.0 32 ............................. TGATGATGCCTCGTCTCCAGCAAAAATTAGCC 29586 29 100.0 32 ............................. AATGCATGATTTCGGTTCATGCAGAGAGGCGA 29525 29 100.0 32 ............................. CTGGCGTGATGCTGGGCGACTTCAGTTCGGGT 29464 29 100.0 32 ............................. TAATTCAGCGTACTGGATGGTGACAAAACTCT 29403 29 100.0 32 ............................. ATGCAATGCTAACTTATAATAACATATTGACC 29342 29 96.6 32 ............................A GTTGCGCTGACCAATATGCGCGACAGCGCTAC 29281 29 96.6 32 ............................T TTGCCTCAATGAGTAGCCACGTTCTCGCAGTT 29220 29 100.0 32 ............................. TATTGTCTCCAACAGCAACAACACCGACAGGC 29159 29 100.0 32 ............................. CTATGAGAAAGCGCCACGCTTCCCGTAAGGGA 29098 29 100.0 32 ............................. GCCAAAATATACTTAATGGGCGGCTATGAAAC 29037 29 100.0 32 ............................. CGCTCCAGCGGTGACGCGACGAAAGAACGGCT 28976 29 100.0 32 ............................. CTTTAGTAGCCTTTTACGTCTATAGCCTTTAT 28915 29 100.0 32 ............................. ACCGGACTAACGGCAATAGCATCCGCCATCGC 28854 29 100.0 33 ............................. CATGAATACCGGGATATTGAACGCTTTTTCACC 28792 29 100.0 32 ............................. CTCAAAATCATCATCAAAATCACGCCACTTTT 28731 29 100.0 31 ............................. CAGAGCGGGTCAGATTCAGGGATGTATGTCA 28671 28 79.3 0 ...........AC..A-....C......A | ========== ====== ====== ====== ============================= ========================================== ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACCAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGTCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATTTAAAAACGGGTCTTTTTCACAGTAGATAATCTGGTAGATTTTGACGGGTGAAAAAATCCGTTATAATTCAGCTGGATGGATTTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 63545-60401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUY010000004.1 Erwinia amylovora strain Ea8-96 Ea_8-96_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63544 29 100.0 32 ............................. ACAGGCCCCTCCACGACTGGACATCTCACGGC 63483 29 100.0 32 ............................. ATCGAATTTTGGTGATTAGTGATAATCAGAGT 63422 29 100.0 32 ............................. CGCTGGTACTACCGTTCGATAGTGTCGATTGC 63361 29 100.0 32 ............................. CGGCGGCAGAAAAGCTATTGCCGGAAGCAAAG 63300 29 100.0 32 ............................. CCAGAGATTACGACCAGCCATGCATTAGCTGT 63239 29 100.0 32 ............................. GATGTATTGCGTAAAACACGCAACGTTATCCG 63178 29 100.0 32 ............................. GGGATGGAATTCGCATCACAGATAGAGGATCT 63117 29 100.0 32 ............................. GAAATGGCAGAGCAGAATTTAATCGAATATCT 63056 29 100.0 32 ............................. ATGCTGACCGCCGCAATCTGGTGGGTCGTTAC 62995 29 100.0 33 ............................. CCAAAAAACGGCGAAATCACTGTTATCTGGTCA 62933 29 100.0 32 ............................. CCGGTATGGCGATGGGAATAGAGCCGTCAGGT 62872 29 100.0 32 ............................. CCACCCTACATTGTGGCGCATGTGGGCGCAAA 62811 29 100.0 32 ............................. CAGTTATTCGACGACTATATAGCAGATCAGGT 62750 29 100.0 32 ............................. CAATTCCGTGTTCTTCAGCACAAGAGCTTAAT 62689 29 100.0 32 ............................. CAGAGCAAAGCGTCATTGGCGGCATATTGATT 62628 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 62567 29 100.0 32 ............................. TTAATGGAAAAGATTGACCAAGAAAGTGCGAA 62506 29 100.0 32 ............................. GTGATTACATAATCTGCCAGCGTTGCCTGCAG 62445 29 100.0 32 ............................. CGGGCCGTGCCTGATGTATCCGCCCCTGTCTG 62384 29 100.0 32 ............................. CCCTCGGTAAACAGGATCTTGGCTCGCAGAGC 62323 29 100.0 32 ............................. CTGGCATGGCGATGGGGATAGAGCCGTCAGGT 62262 29 100.0 32 ............................. AACCAGCGTCAATAATGGAAAATACTCATTTA 62201 29 100.0 32 ............................. GGAGCAATCTATGAATACAGAGCAGCTAAAAG 62140 29 100.0 32 ............................. CGATATCGACTCAGTCGATTTCCATCTCCACA 62079 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 62018 29 100.0 32 ............................. GGTGTCCAGCTCAATAGCTGTTTTTACTGCAT 61957 29 100.0 32 ............................. ACCTGTTTGATGTAGAGCCTGAGAGAAACCAG 61896 29 100.0 32 ............................. AGGAGCCTAATGATTACGGCGAGTATATCGAT 61835 29 100.0 32 ............................. CAGACCAAACCATACCCCTGCTGAATATGTCC 61774 29 100.0 32 ............................. CGTAATCTGATGGCTGATAGCTGGGTGTTGGT 61713 29 100.0 32 ............................. CCTGTCTGATGGCCTTCAATCAGTTACCTAAC 61652 29 100.0 32 ............................. TGAGATTGATGCAATATCGGTCATTGTGTCAC 61591 29 100.0 32 ............................. AATTGAGCTTTCAACGATTGCAGTCCCCGCGA 61530 29 100.0 32 ............................. CTGATGCTGGCCAATCACGGTTACAGTGACAA 61469 29 100.0 32 ............................. CATCTCGCACCAGCAACGAACAGCAGCAAGGC 61408 29 100.0 33 ............................. ATGATCGATAATGTTTTCGCCGCACCACATAGC 61346 29 100.0 32 ............................. CACGAGCCAGAATTATGCAAATACCGCCGTGA 61285 29 100.0 32 ............................. TAAACACGGAGCTGACCCAGTCCACCCCGCTA 61224 29 100.0 32 ............................. TATCAGGGGAATATCTGGAGGCTCACGTTATT 61163 29 100.0 33 ............................. GATGAATACCAGTTCAAAACGGGTGAAGTCTGC 61101 29 100.0 32 ............................. CATGGTCCGAATCGATAAAAGGCGCTGATGCC 61040 29 100.0 32 ............................. CTGGGTGGCTCAGAGTTTGCGAGCATATCTCC 60979 29 100.0 32 ............................. AATTAATCCAGCTGTTCGGTAGTGCTGTTGCT 60918 29 100.0 32 ............................. CGTGCATACAAAAAAACCGCAGACAGGCTCAA 60857 29 100.0 32 ............................. TATTTATTGAAAGTGCAATTGCAGCAGCACGG 60796 29 100.0 32 ............................. CCTGCGTGAGTCAGCGAGTCAAAAGGGGCTTT 60735 29 100.0 32 ............................. CCGATTGTCACGCGAGTTGGATTTAATGCCAA 60674 29 100.0 33 ............................. AACTAATGTTGCTGTGCTCACAATAATCCCTCC 60612 29 100.0 32 ............................. GCAAAAAAACATGACTGCATATCTGTATCGGA 60551 29 100.0 32 ............................. TCCAGAAGGGCATAACCTGCATTAACCCGCGA 60490 29 100.0 32 ............................. AGCAGTACAACATGTTCGGCTCGGCAATTAAT 60429 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACTTCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //