Array 1 294082-294756 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKH01000001.1 Listeria monocytogenes strain FSL L7-0205 NODE_1_length_1000635_cov_66.182510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 294082 29 100.0 36 ............................. AACTATCAAAACAACAGTTGCTGTCACTGTGACAGC 294147 29 100.0 34 ............................. AAAACAGAACATATGTGCTATTAATAACTTTGAG 294210 29 100.0 36 ............................. TTCTTTGCCGAGCTTGATTAATTCTTGCTGCTTAGT 294275 29 100.0 36 ............................. GATAGAGAAGATGGAATCTTAATGCAAAAAAGAATC 294340 29 100.0 35 ............................. ATTGAAAACAAAGGCTTCGAGATTTTCACGTTATC 294404 29 100.0 35 ............................. ATGGTTAGCAAAATATCTGCATTTGATGGAAGTTC 294468 29 100.0 36 ............................. CCTGCTAACAAAGAAATCATTTTGGACTGTGAAAAT 294533 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 294598 29 100.0 36 ............................. ATACCTTTTGCAACTTTAAGCAACCGTGATTGGAGT 294663 29 100.0 37 ............................. AATCGTCACGATGGGAAAGTCATTGATAGCGCGCCAC 294729 28 75.9 0 A.....A......-..CAT....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 97.8 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCAG # Right flank : TCCCCTTCATATACAACTCCACCACCATCCATCAAAATCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCAGTAAGAGAAGCGTCTGTTTCTTTCAAATCTTCATTAAATTTGCCGTAGCCCATGCTGATGATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTTCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 311586-313694 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKH01000001.1 Listeria monocytogenes strain FSL L7-0205 NODE_1_length_1000635_cov_66.182510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 311586 29 100.0 37 ............................. GCAGAAGAAAAGAGTAGTGAAGAAGATGATGACGAAG 311652 29 100.0 35 ............................. TTGATTTCTTCCGCATTATCTTGCCACACTTCTTC 311716 29 100.0 37 ............................. TCAACTGCTTAAAGAACCTCTTTGCGAAAGATGTTTA 311782 29 100.0 36 ............................. ACGGATTGTACAAAGTGTTTGGTGACAATAATGCGC 311847 29 100.0 39 ............................. GATAAATCAATGGGCATAGAAATTAACGGCAAACTTCCA 311915 29 96.6 34 A............................ GATACCTCTCTTGACATGCAATGGCATGCTTCAC 311978 29 100.0 36 ............................. TTTCTTAACGAAGCCTACCTAGTTAAATTTAAAAAC 312043 29 100.0 35 ............................. TTTCTAAAGTACTATCTATTCCGAAGTACACTGCG 312107 29 100.0 37 ............................. AAAACTGGCAAAACGTTTCCTCTGGCAATGTTTCAAA 312173 29 100.0 37 ............................. TGTTGTTTGCGATTTATGGTTATCTTGTAGACCCGAC 312239 29 100.0 35 ............................. AAGTAAAGCCCTTGATGCAACCTATCAGTTTGATC 312303 29 100.0 37 ............................. GAGGGTATTAGACAAGTTGTCACTAAAATAGAAGAAA 312369 29 100.0 36 ............................. AGAGGTTATGGGTGGTGGTTAGATAACATTAAAGAT 312434 29 100.0 36 ............................. TGAATTGAGCTTTTGTTTTCGCTACGTCCTGTCCGC 312499 29 100.0 36 ............................. GAAGATTCGGTTATTATCGTGAACTATGAGCGTGCT 312564 29 100.0 35 ............................. ACAATTATCCCAATTACAGGTAACATTGCAGTGAC 312628 29 100.0 35 ............................. AAAATAGAAAATGAATCAACTGCCGATATTTTCGC 312692 29 100.0 38 ............................. CAAACTATGAAATACGCGGTTGATTTTGGCTTTAATGA 312759 29 100.0 35 ............................. GAAGGTAAGAATGTTCTGTTGGACTTGCCGCGCGG 312823 29 100.0 37 ............................. GATATGTGAAATTTTCAAATCGATTTCTCGTTTTAAT 312889 29 100.0 34 ............................. ATTTTCACTACTAGGATAGACGTTGATTCAATTG 312952 29 100.0 36 ............................. TGACTTCCAAAAATAGCAGAGATTGCCGCCGCTTTT 313017 29 100.0 36 ............................. AACCTTCGATTTCATTCACGATTATTACGAAAAAGA 313082 29 100.0 35 ............................. CGAGTTACTGGCAAAGGTCAAATATACCTATTAAA 313146 29 100.0 35 ............................. ATTATTTCTAGAGAGCGCTGGGAACAATACTTAAC 313210 29 100.0 36 ............................. TACGTATTTCAAGTGACCAAAAAAGAGTGCTTGGAC 313275 29 100.0 37 ............................. TTTTTCGTTCATAGTCTAATTGATAGGAAATAACATC 313341 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 313404 29 100.0 34 ............................. TCGCTAACATTTCAGCCCACTCATCAGCCTCAGC 313467 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 313533 29 100.0 36 ............................. TTCAGTAACATGTTCGCTGTAATCACGAATCTGAAA 313598 29 100.0 38 ............................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 313665 29 93.1 0 .......................A....C | C [313688] ========== ====== ====== ====== ============================= ======================================= ================== 33 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAATAACGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //