Array 1 166806-167932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPE01000030.1 Pseudomonas aeruginosa strain AZPAE14990 AZPAE14990_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166806 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 166867 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 166928 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 166989 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 167050 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 167111 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 167172 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 167233 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 167294 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 167355 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 167416 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 167477 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 167538 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 167599 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 167660 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 167721 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 167782 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 167843 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 167904 28 79.3 0 A..........A..C..-.....A....T | C [167908] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177105-178843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTPE01000030.1 Pseudomonas aeruginosa strain AZPAE14990 AZPAE14990_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177105 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 177166 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 177227 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 177289 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 177350 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 177411 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 177472 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 177533 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 177594 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 177655 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 177716 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 177777 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 177838 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 177899 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 177960 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 178021 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 178082 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 178144 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 178205 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 178266 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 178327 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 178388 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 178449 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 178510 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 178571 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 178632 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 178693 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 178754 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 178815 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //