Array 1 53-935 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIW01000011.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_2044 NODE_11_length_124691_cov_0.153862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 114 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 175 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 236 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 297 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 358 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 420 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 481 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 542 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 603 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 664 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 725 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 786 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 847 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 908 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTCTTCCGATCTTAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17068-18544 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIW01000011.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_2044 NODE_11_length_124691_cov_0.153862, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17068 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17129 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 17191 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 17252 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17313 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17374 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17435 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17496 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17557 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17618 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17679 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 17740 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17801 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17863 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 17966 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18027 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18088 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18149 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 18210 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 18271 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18332 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18393 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18454 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18515 29 96.6 0 A............................ | A [18541] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44861-45560 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIW01000038.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_2044 NODE_38_length_45560_cov_0.133169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44861 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 44922 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 44983 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45044 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45105 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45166 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45227 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45288 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45349 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45410 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45471 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45532 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //