Array 1 984000-985291 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023427.1 Escherichia coli strain HUE1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 984000 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 984061 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 984122 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 984183 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 984244 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 984305 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 984366 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 984427 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 984488 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [984512] Deletion [984529] 984530 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 984591 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 984652 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 984713 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 984774 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 984835 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 984896 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 984957 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 985018 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 985079 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 985141 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 985202 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 985263 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1011618-1012866 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023427.1 Escherichia coli strain HUE1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1011618 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 1011679 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 1011740 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 1011801 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 1011862 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 1011923 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 1011984 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 1012045 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1012106 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 1012167 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 1012228 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 1012289 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 1012350 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 1012411 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 1012472 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 1012533 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 1012594 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 1012655 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 1012716 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 1012777 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1012838 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCACCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //