Array 1 492-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFJB01000040.1 Neisseria meningitidis strain NM1364, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 491 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 425 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 359 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 293 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 227 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 161 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 95 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TCCAAATAGAAATACATACGCCGAGTAATTAGTTGTAGCTCCCTTTCTCATTTCGCAGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 2 1294-1988 **** Predicted by CRISPRDetect 2.4 *** >NZ_CFJB01000040.1 Neisseria meningitidis strain NM1364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1294 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 1360 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 1426 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 1492 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 1558 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 1624 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 1689 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 1755 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 1821 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 1887 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 1953 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CGAACAAAAATCCCCGTTGCAGCGGGGATTTTTGCTGTTCCCTGTTTGATGATTAAACTAAAATCTTGCAAAATGAGACCTTTGCAAAATTCCCCAAAATCCCCTAAATTCCCACCAAGACATTTAGGGGATTTCTCATGAGCACCTTCTTTCAACAAACCGCCCAAGCCATGATTGCCAGACACATCGACCGTTTCCCGCTATTGAAGTTGGACCAGGTGATTGATTGGCAACCGATCGAACAATACCTGAACCGTCAAAGAACCCGTTACCTTCGAGACCACCGCGGCCGTCCCGCCTACCCGCTGTTGTCCATGTTCAAAGCCGTTCTGCTCGGACAATGGCACAGCCTCTCCGATCCCGAACTCGAACACAGCCTCATCACCCGCATCGATTTCAACCTGTTTTGCCGTTTTGACGAACTGAGCATCCCCGATTACAGCACCTTATGCCGCTACCGCAACTGGCTGGCGCAAGACGACACCCTGTCCGAATTGCTN # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //