Array 1 87115-88074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUC010000011.1 Listeria immobilis strain FSL L7-1510 NODE_11_length_95252_cov_31.941203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87115 36 100.0 30 .................................... GAGCGCAGAGGAAGCATTGCAGATTGTGGA 87181 36 100.0 30 .................................... AACATGGTACGCTAAATCTGATACAGACAT 87247 36 100.0 30 .................................... AAATCTTACTGCCGTTTTTGTCAGTTAATC 87313 36 100.0 30 .................................... ATACATTTCTGTCAGCAAGTCATAAATGCA 87379 36 100.0 30 .................................... TAGAAATAGAATATCCTTCTAATTCACTTC 87445 36 100.0 30 .................................... TGAAGCATGGATTTTTAATACAACTCAACA 87511 36 100.0 30 .................................... CGATGTTAATAACTCGTAATGAAATACCTC 87577 36 100.0 30 .................................... GCCCATCGAAACGTTATTTATGATGCAATA 87643 36 100.0 30 .................................... CGAATCTGCATGGCTCGTAAAAAATGCTGC 87709 36 100.0 30 .................................... TGAAAAAAGTACTTTTACATCGTTGAAATC 87775 36 100.0 30 .................................... AAGCAAAAGGACATTTGAGAGAAGTTGACT 87841 36 100.0 30 .................................... TCTTTGCCATACGTTTTTTCTCTGACCTGC 87907 36 100.0 30 .................................... CCGGCGTAAAATATTTAAGGCGGAAATTGA 87973 36 100.0 30 .................................... AATCATCGGGTGGTTTATCGTTTTACCAAT 88039 36 86.1 0 ..............C.........G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCAAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCGTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAGGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGATTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGAATAAAAATTTCTGCGAG # Right flank : CAAACCATCTAATTTCGGTTTGTTTTTTTATTTGCCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGAAAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATCGGCAACCAACACATTCGTTAAAACTCCTGAAATGAGACCTGGCTAAAATAGCAGATGAATATTCTCACAATGTTGTTATTTCTATTTCTAAACAAGCTCATTTAGCTGTTGGCCCTCTCTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTATTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGGGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATGAAGCGTTTTATTACACATACTACAAGAAGCTATTCTGCCTATTTAATAGACATCTACACTTTGCGGACGCTTATTATAAATTTTCTTAGAATAATAATATAGCATAAATAAAATAAATCTTGATGAATTAGAAGTTTTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 87813-87970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUC010000002.1 Listeria immobilis strain FSL L7-1510 NODE_2_length_258655_cov_22.528862, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 87813 26 100.0 40 .......................... AATACAATATAATTCAAATTCGAGCGCTGGGTAAAAGACT 87879 26 100.0 40 .......................... TCCTGTTAAGTCCTGACTTTTCGGCATAGCGTAAAAGACT 87945 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================== ================== 3 26 100.0 40 ACCTCTATATGAAAGAGGACTAAAAC # Left flank : TATTTTCAAATTCATTAGAAGAAATCAACCAGTTTATAACTGATTACGTCCCAGCTGAAGTTCGAAAATATTCAGTTTAATAAAAGTCACTCTATGTTATATTACATAAAAAGCATAAAAGGAGATGATTGTCTTGAAAAAAAGCTTCATTCATTTATTTTTCGGAATGATTATTCTAGTAATTATCGCCCTGTATTTTTCATATGCATATCTAAATCAAAACTTTAAATGGATTGCAGGAATACTTTTGTTCTTAGGTACAATATTCAATTGGTTTTTATATCATAGGTATCTATCGAAAAAGTCTAATAAACAAGAGGACAACTGAGTGGAGACAAATATTTCTTTTTTTAAAATCCTAAATTCACATAATGGAAAATGGCTCTAAAGCGATATAGAGTATCCGGAAAACAATGTATTCTCACGCAAACCTCAAACTATTCTATTAAACGCTTTACATTTTTTACTTTAATTACTATTATTGAAGTAAGAGACATATC # Right flank : CGTCTAATGTGGATAAGTCTAATAACACTTATCCATCATTTAGGTGTTTTATTTTTTTGTGATTATATGTACAATAGGAGAGAGAACAAAAATCATTGAGGTGAAAACTATGAGAATTACCAAAGTAGAGATTAATAGAAAAAAAGTGCTAATGTCTAGGGATAAATACGGGGGACGGTTAGTTTATGGAAGTGAAAAGCAGGATAATACTGAACAAATTATGCATCGAAAAAAAAGTTCTTTTTACACAAGTGTGGTAAACAAAACTATTCGTCATCCGGAGCAAATGAAAAAATTATTTCATGGATTATTACAAAAAAATAAACAGGAAAAAATCAAAGTTTCGAATGTCACTAAACTTAATATCACAAATTCCTTCAATCATCGTTTCAAAAAAAGTTTATATTATTTTCAGGAAAATACTCCTGTCAAAAGCGAAGAATATAGAATAGAAATAAATCTCTCACAATTATTAGAAGAAAGCTTAAAAAAACAACAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCTATATGAAAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 139486-140357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUC010000006.1 Listeria immobilis strain FSL L7-1510 NODE_6_length_163179_cov_29.418223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 139486 29 96.6 35 A............................ CTATCCGCCCAAGCACCCGTTTCTAAGCTGACAAA 139550 29 100.0 34 ............................. GAATAAGGTAATTATGAATTTTTTGTGACAATTT 139613 29 100.0 35 ............................. CATACCTTGTGTAATGGGGGTGCCTGTTAAGGTGT 139677 29 100.0 37 ............................. GCTCGTAATACTAGCGCCCTCTACCTGCGCGGTTGCG 139743 29 100.0 36 ............................. CTCCTTTTTATTTATGGTAACAATACTAACAAAAAA 139808 29 100.0 37 ............................. GCTTATGCGACAGCAAGGCAAAGAAGCGTATGGCACA 139874 29 100.0 34 ............................. ACTTACGAAAAATAAATGCGACTTTGGACTTGAA 139937 29 100.0 37 ............................. TTTATTGTTTAAATTGCAATAACTGCAAAATTTTCTC 140003 29 100.0 37 ............................. AAAAAAATATAAAGCTAAAATGACAAAAAAAGCGAAG 140069 29 100.0 35 ............................. TCTTTCACGCTAAATTTAACCGAGGAAGTGTTCAA 140133 29 100.0 36 ............................. CCAAATATCCCTCAGAATAATCCCCAACCACGTCAT 140198 29 100.0 37 ............................. ACAATATTGTAACATAAAACTAATCCTTCAAAGCGAT 140264 29 100.0 36 ............................. GCAGGTTACACGATTGATACCACACCCCCGTAAAGC 140329 29 79.3 0 ............C.C.A......A...TC | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 98.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCTGATATTCTACTAGAAAAGGGTGCTACAGAAGTAATTGCTTGTGCAACCCATTCAGTTATGGCTGGAGATGCAACAGAACGTTTACAAAACTCAAAAATCAAAGAAGTTATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTTGAAAAACTAACCACCATCTCGATCTCTCGCATTCTTGGTCGAGCAATTGAAGGTGTTCAAGAAAACCGCTCATTACATCCATTGTTTTAAAATATCATTTAAAGTAGAGACACAGTGGCGTCTCTACTTTTTTTGCACACGAAAATCTGTCGACCGCTAGTAGTGCAAAAAACACGCTAGGTCGACAGAAATTTGTAATTACCTGCAGGAGAACGATTGAGACATTTTTACAGGCAATAAAGCATAGCAAACACCCTGATTCTTCCCAAAAATAAAGCCGGTCGACAAAAAGGGACTGTTGAGGTAAGATGGGAGTAAGAGGAAAATGGAGCGG # Right flank : CTGTTTAGCTCCATAACGTAGCTGTAGCGCACATTCTTAGTTAGCCTAGCTTCGATAAAGAAGTAAAAATTAGAAATAAAAGTTTTAAACTGTTTTTCCCGACTTAATGACATAAAACAATAAAAAGACAAAAAGGGGAATATATTATGAAAAAAACATTATTTTTTTTACTTTTGCTATTATTTTTACTAGCTGGTTGCGCGGCGCAGGACGAAGAATTGTCCAAAGATACAGAAATTTATAAGGGAAATGTTATAAATGCTGATTATAAAGTGCCTCAAAACTTGACGGAACTTGCATCTGCCAGTGAAGATATTGTGCAGGTGAAATTAGTCCGAAATAAAAAGAGCGGCGAAGAAAACAATACAATAAGTGAAGTAGAAATAATTAAAAGTTACAAAGGTACATATAAAACAGGAAATAAAATTGATATTTCAGAGCCTTGGTTTTTAGTTGCCGGCAAATACCAAGCTGTTGAAAACTATATTGCCCTTGAAAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 146719-147726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUC010000006.1 Listeria immobilis strain FSL L7-1510 NODE_6_length_163179_cov_29.418223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 146719 29 100.0 37 ............................. TCATTTACTGCCTCCATTTCAAAATAAAGAAGAGCCC 146785 29 100.0 36 ............................. ATATTCCGGAACCGTTAGAGTGGTTGGATGGATTTG 146850 29 100.0 36 ............................. CCTAAAATATCAGCAAAATCATCTACGCTGGAACCT 146915 29 100.0 38 ............................. TAATTTCAATCTCTCCTTTAATTGATTTTTTTTTGCTT 146982 29 100.0 36 ............................. TTGCTTGGCTTTATCAATATGCAAAAGAAAACGAAG 147047 29 100.0 35 ............................. CTCATCGTAATAGTCGCAAAACAAGATTTCTTTTT 147111 29 100.0 37 ............................. GTGGACTAAGAGGCGAGGATTACAAAGAGGCGTTTTT 147177 29 100.0 36 ............................. GAAATCGGCGGTATACAGTTGAATAAATTATCTACT 147242 29 100.0 39 ............................. GAAAATGTGAGTATCGGACGTACTTCTATAAGCGGTAGC 147310 29 100.0 34 ............................. GTATTTAAAGTGATAAACACCATTTTCGTTCAGA 147373 29 100.0 35 ............................. TACGAACTATACTTCATTATAACTAGACTCTATTA 147437 29 100.0 35 ............................. TTCCCAAGCTTGACTCATAATTTCTGCTTTGTTAT 147501 29 100.0 37 ............................. AAGAAATTGACGAGTTTCACGATAATACAAGACGTCG 147567 29 100.0 38 ............................. TTGTGACCAAGTAGACTAGTCTTAGCGTAGATATTACC 147634 29 100.0 35 ............................. TTCGCAGGTGGCGCACAGTTGACCCCGGCATAAGC 147698 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 16 29 100.0 37 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAGAATGTCACTGTACCATCTTTCTTTTCTGTTGTCTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTTTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTAAGTTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTATGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGAGATGCATTGGGAGAGAATGAGAGTGGGGGATATTTTGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCGATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : TACTTCTGGAATATGTGGGAAGAAAGAACGAAGTCGACATTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTCAAAATGTGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGAAAATTTAATACATACCAAGAGACAGATGCGCTTTTCGATGTGTGAAAATGAAAGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGCTTGGAGTAAATTGAGAAATTGCAACAAAAAAACAAGGAACTAGTGCAAAATTAGTTTCTTGTTAGAGTGGGTGTCGGTTATTTTGAAGGATAGAAGTTTCTAGAGACTGCAGGTCAGTTATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCCTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGCGTTCAATGTCAGTTACATTTTTGGCTTTTTCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 159186-160987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUC010000006.1 Listeria immobilis strain FSL L7-1510 NODE_6_length_163179_cov_29.418223, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 159186 29 100.0 36 ............................. AAATTAAAGGAGATTGATGAAAAATGACAACGAAAG 159251 29 100.0 35 ............................. CATTGCGAAAGTCAATATGCAGAATTAGACTGGGG 159315 29 100.0 37 ............................. TTTATTAGATAGTGTGAATGTAGAATTAAACGATAGG 159381 29 100.0 37 ............................. TTTAATTTGTTGGTACACTGATTTATAGAGCGTATTG 159447 29 100.0 37 ............................. ATCATTGCACGTCCGAACGGGCTAGAAGTGTCTAACG 159513 29 100.0 37 ............................. TGAAAATACGGATTGGTGTGAGCATTATAGTGAATTG 159579 29 100.0 38 ............................. AACTTCAAGTTCTGCTTTTAAAGACTCGACTTGTAACG 159646 29 100.0 36 ............................. GCAGGCAATAATACTTCGTTTTCATCTTCGCAATCG 159711 29 100.0 36 ............................. TATGATGAAGAAGAATTTTTTTCAATCGTATTTTTG 159776 29 100.0 37 ............................. AAGCGCAGGCCACTCCATTCCTATCATGGTCGAAGAT 159842 29 96.6 37 G............................ GAAGTGAAGAATGAGTGGTAATAAAACATACAGTAAG 159908 29 100.0 36 ............................. GACGAACTTCCACCTCGATTCTCGTCTGTGATTTCG 159973 29 100.0 38 ............................. CAAACTTTGCTTTAACAGCAGAGGAACGAGACATGTAG 160040 29 100.0 40 ............................. GAAACAAGTGCATACGTTATTGACGATTTACATTTTGATG 160109 29 100.0 35 ............................. TCTGTATAATGCATATTTACATAAAGAGCATCTTG 160173 29 100.0 39 ............................. ATTTAAGAGATGCAGATTTAAGTGAGGCAGATTTAAGTG 160241 29 100.0 35 ............................. CTTGTATATAGTGGGGAGCAATTTCTTCGATTTCG 160305 29 100.0 37 ............................. GAGCACATCTGGGCGTATATTTTTCTAGCAATGACGG 160371 29 100.0 35 ............................. ACGCCTTTTTAGTATCATCACTTAATTTATTCTCG 160435 29 100.0 37 ............................. CATATCTATATAGTTTTCGCTATTTAATGTAACAAAG 160501 29 100.0 36 ............................. TTGAGAAAAGTAAGCGACTATTCAACCCTGCTAATG 160566 29 100.0 36 ............................. ATCGAAGCGCCTCACCCGCGGTGCACCTCATTTTTG 160631 29 100.0 38 ............................. GAAAAAATTGTGCGCTTATTGGATTTAGAAGAAGGCGG 160698 29 100.0 35 ............................. ATGCCTACTAGGTCGGGAACTCGAACGATAGCAGG 160762 29 100.0 36 ............................. CCTCTCAATACGTTGTTTCGCTAAATTATAGTAAAG 160827 29 100.0 37 ............................. ATTTAACCATAGCCTTTTTAGTTATGTTGTTCTTTTG 160893 29 100.0 37 ............................. CCTTTTGCATACCATTTAACGTCAATGCCTGATGGAG 160959 29 89.7 0 ............CT..A............ | ========== ====== ====== ====== ============================= ======================================== ================== 28 29 99.5 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTAAAATTTGGTGGTGAGCATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCTGCACTTTTGGTAAAACTACGAATGGAGTTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGATTTTTTTCTGTCGACCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGGGGATAAGCTTTCTCGGATATCTTACTTATTTAAATTAGGAAAACAAAACTAATTTCCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAGGGAAAGATTTTGACGGG # Right flank : TCTATCTACAGTTTATGAAAACTCTAGTAATTGATAATTATGATATTTTAGTATGAGCAAGATTAAATTCTAAATCATTCATATTCTTCTCAACCACTTTAACTACTTTTTACGATATACAATCAATACTGAGATATTTATCTACAAAAACGCCAAAAAATGTAAATATCCAATATTTTTCAATATATCCCAAACTTAGAGGTTAGAATTTCTAAGTTTTTTATAACCATCTAAAATATAATTAAGGTTATTTCTTCTTTTTTAAGCAGAAATTTCACAAAATACTCACAAATGGCTCCTAACAAAATGCTATACTAAAAGGTAGGGAGAAATCCCCTCATTTTAGATAGAGAGGAAGCGACGAGATGAGCGAGATAAAAGTACGAGAAACCACTTTCCAAAGCCATGCAAGCAACTTGGCAAGCGCCAGTGACGGGAGCTATTTACCACTAAAAAACGGTAATATGCCCTATTCAAGAGCCAATTCGATTAATGAATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //