Array 1 46049-50287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAI010000002.1 Shewanella algae strain MAS2736 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46049 29 100.0 32 ............................. TCGGCGCTTAACACATCCGAGGCAACAGCTCA 46110 29 100.0 32 ............................. AGCGCGAAGTCAGCATGTACCGTGAGAACGCC 46171 29 100.0 32 ............................. CGTTGGTGCTGGCGCCGGAGGCATTCTTTCCA 46232 29 100.0 32 ............................. ATCAGCCATGCGTTTAATGGTCTGGCGGCTGA 46293 29 100.0 32 ............................. TTGCAGCTGCCACAGTCAAACACGACTCCGGG 46354 29 100.0 32 ............................. GAACGCCAGCCCGCAACCCACTGAAACAGAAT 46415 29 100.0 32 ............................. GCCTGCATGAACAGCCCCATGTTTTCCAGGTT 46476 29 100.0 32 ............................. ATATGCTGGTCATACCGCGCTTCAATACTCGA 46537 29 100.0 32 ............................. TCCAATCAGAAAGTTTATTTTTTTGGTGGGGG 46598 29 100.0 32 ............................. ACTACTTTTGCGGTTATCGTTGAGACAGGTAG 46659 29 100.0 32 ............................. CACCATGCAAACGAGGATCGCGGAACAAATCA 46720 29 100.0 32 ............................. CCGACAAAGAAGTGCTCAGTGATGATATCGCC 46781 29 100.0 32 ............................. CGTGCGTTACGGTAGCCGCTAAAAAAGATATT 46842 29 100.0 32 ............................. CACTAATGCAACAGTTTACAATACATAAGAAA 46903 29 100.0 32 ............................. ATCTCGCGCTACTGCGCCATGGCTCGGTTATC 46964 29 100.0 32 ............................. GGATTCAAATCATCCCCGTTGGTAACTTCGAG 47025 29 100.0 32 ............................. ATTGTTTCCGAATGGGTCACAGGTGCCATGAT 47086 29 100.0 32 ............................. AACGGTTCCTGTGTTTGCGTATGTACCAGAAC 47147 29 100.0 32 ............................. TGCGACACATTGTGTCGAATGCGATGAACCTA 47208 29 100.0 32 ............................. TGACGGCGGTTTACCGAGAATTTGCTCCCACC 47269 29 100.0 32 ............................. GATCCGGAGAACGAGAACGGTCTCATCTTCGA 47330 29 100.0 32 ............................. CGTGGGACGTTAACGATCCGGAGCCGCCACGG 47391 29 100.0 33 ............................. CGGATTGGTTGACATCACCTACAGGTGATTTAC 47453 29 100.0 32 ............................. TCGTGGGTGTTACTGGTGGCAAGCTGAAACGC 47514 29 100.0 32 ............................. ATACGCCACATGACGAGATCATTATGATGGCC 47575 29 100.0 32 ............................. CCGGTTCGTGGGTGTGGGGTGGTACCGAACGG 47636 29 100.0 32 ............................. AAACCACGGTTATATGGGAAAACTGTTACACA 47697 29 100.0 32 ............................. GCGTCACAGGTCTGACGCTGGAAGAAGCGATT 47758 29 100.0 32 ............................. CCTCGTGAATGGACGCTTGATGCGCGGGAGAA 47819 29 100.0 32 ............................. CGTGTGGCGCAAAGCGGTCGAGGTGTTTGATA 47880 29 96.6 32 ............................C GCATAGGGTAATACGTCGCTGAATTGATCGGC 47941 29 100.0 32 ............................. CGCTACCTGTAGCATTGAGACCCGTCAGCGCA 48002 29 100.0 32 ............................. CTAATCGACGAACTGTGTACACCCAAGCGCGA 48063 29 100.0 32 ............................. CTCGCCCTGAACGGTGTGTACGGTGACAGTAA 48124 29 100.0 32 ............................. TTCTTGACCGGCGGTGACGCTGGCGACTTGGT 48185 29 100.0 32 ............................. ACGCCGGAACCCGTAACCGGCAACCCTTCCAC 48246 29 100.0 32 ............................. TAGTGGTGTAACGTAACGCATTGATTTCACAC 48307 29 100.0 32 ............................. GTGTCGGACAGTTACTATAACGCCGTGATGCG 48368 29 100.0 32 ............................. GAATTGCAGCTCGTCGGCCGGCGACAGGTTGG 48429 29 100.0 32 ............................. TAAGGGGTATTGAGGTAAAAGAATGTAAAAGA 48490 29 100.0 32 ............................. GATGATGCGTGACCCGCTTATTGGTAACATCG 48551 29 100.0 32 ............................. CGCAGAGATGGGACTGTTGAATCCATCAGGGT 48612 29 100.0 32 ............................. CAGGCAAATAACTAAGCACTTCTTCTGCATGG 48673 29 100.0 32 ............................. ACCAAGACTCAGGTGAGCTTCATCGACAACGA 48734 29 100.0 32 ............................. GTCTGGTATCGCTCCGAGGTAGAACTCAAGCG 48795 29 100.0 32 ............................. GGAAAAAACAGAGAAAACACCACCTATCAAAA 48856 29 100.0 32 ............................. ATGTTGATGCGCTCTCCAATCCGGCTAAAGCC 48917 29 100.0 32 ............................. CAAGAGATGATTAATCAGCTTGTCGTCACCAA 48978 29 100.0 32 ............................. CGCCCTTCTTTTGCTGCCGGAAGTATATGAAA 49039 29 100.0 32 ............................. TTAGGAGAGAAAGCGCTTAGCAGAGGCAGTCA 49100 29 100.0 32 ............................. GAAAGATTAAAAAGACTGAGCTGGACATTGCC 49161 29 100.0 32 ............................. CGCTGGAGGATTTAAAATCTATCGCCAGGCAC 49222 29 100.0 32 ............................. TTGATTCAATGGTTTCAGTTCCAGACGTGCCG 49283 29 100.0 32 ............................. ACTTTGAAAACATAGAATCAGGGTCTAGCGCC 49344 29 100.0 32 ............................. GCCACAACGTTTTTGGCTCCAACGATTTCCGC 49405 29 100.0 32 ............................. CCTTGCCGTTCCGGGTTCGTAGTCATCCGGGA 49466 29 100.0 32 ............................. CCAGTTCACTATGAAAAACATCCTGTAAGCGC 49527 29 100.0 32 ............................. TCACTTACCGCGATGGAGAAAGGGGCCGATGA 49588 29 100.0 32 ............................. CCGATAGAGAGTCAGCCTTCCAGGCATTCAAG 49649 29 100.0 32 ............................. CCTTTGCTGCTCATCCCTATCCAGGGCGATGA 49710 29 100.0 32 ............................. CCGTCTTTGGTCATCTCGTAGGATGGGCGTTT 49771 29 100.0 32 ............................. GCGGCGTGAGAGTAACGACCTCATGCGAACAC 49832 29 100.0 32 ............................. CGGTTCGGGTTGTACTACTGGTGCGACTCAAC 49893 29 100.0 32 ............................. GCGGTAAACATCTGCAAGATTGACCTGGTTAT 49954 29 100.0 32 ............................. TACTCACGATGCAAATCCTTGACCCGCAAAAC 50015 29 96.6 32 A............................ GGTAGTAGCTGGTGCGTGGGTTGTGTCTTTCG 50076 29 100.0 32 ............................. CTACGTATCCGGGAAAATGAGGTGTACAAACG 50137 29 100.0 32 ............................. TGCAGCATCAGCGACAAACAGATAAAGTACCT 50198 29 100.0 32 ............................. CCCAGAACAGATGTATGACTGGTTCAACCGCA 50259 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 70 29 99.9 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCTTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAATCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : GGAGATATGAAATGGCCATTGCATACGTAGAACGAGTTCCCCGCACTGTAGTGGCATAGTGAATTTGGCCATCTAAATAGACGAAGTGATAGACTCACTTTTCGCAAATGGGTGGCAGATATGAAGAACACAAGACCGACATTCAGCGCTGAGTTTAAGCTAGAGGCTGCTCAGCTAGTAACAAAGCAAGGCTATAGTGTGGCAGAGGCTGCAATCGCAATGGGAGTCAGCAATTCAGCCATGCGAAAGTGGGTAAAACAGCTCCAACAGGAACTGCAAGGCGATTCTCCCAAAGGCTCACCACTTACGCCTGAGCAACAGCGGATCCGTGAGTTAGAAAAGAAACTTCGCCGCATCGAAGAAGAGAACATTATTTTGAAAAAGGCTACGGCTCTCTTGATGTCAGACTCACTGAACAGTTCTCGCTAGTCGAGAAACTCAGGCAGAGCCATAGTGTAAAACTTATTTGTTCAGTATTTGGTATTCATCGCAGCANNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51380-53304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQAI010000002.1 Shewanella algae strain MAS2736 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51380 29 89.7 32 A.C......A................... GTGTCACGCCACTTGAGCTTATCGACACATTC GA,A,TA [51384,51388,51390] 51446 29 100.0 32 ............................. CAAACAATAAAACTGGGGGGTCTGGTGCTGGA 51507 29 100.0 32 ............................. CCAGTCCACTAGCCATTTTGGCGTTCTATAGC 51568 29 100.0 32 ............................. TACACCCCCGGTTTAATCAAAATCGTCAATGA 51629 29 100.0 32 ............................. CTGACAGAGAAAGTTGGTTTGACAATGCTTGA 51690 29 96.6 31 ............................T TCCAGCCGCCAGAGGCTATTAATGTTGGAGA 51750 29 100.0 32 ............................. TAGAACTCGATTCGTAGGCTTTACTAATCACT 51811 29 100.0 32 ............................. GCCTTTTGCAATGTAATCGGAAAAGTAAGATC 51872 29 100.0 32 ............................. GATAATGTCTAGGCCATGCTGAGTTAGGTAGA 51933 29 100.0 32 ............................. AGAGAATGTGTTATTCGCCCTGCCACGCTCAA 51994 29 100.0 32 ............................. CGATTCTTGGCTCGTTCTCTGGCGACTTCATC 52055 29 100.0 32 ............................. GCGCTTGGCAAGGCAACAGTTTACGCAGCGGC 52116 29 100.0 33 ............................. CTGAGCCAGTTAACCTTGATGGGTTGCGTGAGC 52178 29 100.0 32 ............................. GGTTCCACTCTTAGCCCGGGCGGCTATACCCG 52239 29 100.0 32 ............................. TTAACGGTAGAAAAAGCGCCACCGGGTATTAC 52300 29 100.0 32 ............................. TTGGCTCACTAGGCACTGTCGCAGGTGGCACA 52361 29 100.0 32 ............................. ATGGTAGCTGCCAAGGAAAAAGACCTGGAGCA 52422 29 100.0 32 ............................. TCAAGGCAGAAGTCACAGACGTGGAAACCGAT 52483 29 100.0 32 ............................. ACAGGGCATGTACCGCATCAATAGCGGCAAGT 52544 29 100.0 32 ............................. CCAAATCATGCGCGATAACCAATGGGCCCAAG 52605 29 96.6 32 ..A.......................... GATTCTGTGGAGTTTAGCTATATTGACCCAGA 52666 29 100.0 32 ............................. TGAAGCAAATGGGCCAGAATCCTCGGCTATAA 52727 29 100.0 32 ............................. GAAATTGAGGAAGAGCTTGAGCGCATGCCACC 52788 29 100.0 32 ............................. TGTTAATGATAGCGGATGTTATTGCAGAGGCT 52849 29 96.6 32 ............................A TCAACGGTCTAGAGATCGTGACTCGCCCAACC 52910 29 96.6 32 .T........................... CAGATGCCGACCGGTAGATCGCTTGTCTTGTC 52971 29 96.6 32 .T........................... TATCGCTACTTGCTGCCGAGGTTGGAGGAAAA 53032 29 96.6 32 .T........................... CCGCTTGAGTATGTCGAGCGTGACGGCTACAC 53093 29 96.6 32 .T........................... CCAAATGCGCGAGCCTCGGCCAGCGTTTTCAT 53154 29 96.6 32 .T........................... TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 53215 29 96.6 32 .........A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 53276 29 89.7 0 .T........................GT. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.4 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATAGTACTCTAACGAGTAAAGCCTTAGTGATGGCTTTTGAAGCGCGAGGCAAACCGAAACACCTTATGTTCCATAGCGATCAAGGTAGTCACTATACGAGTCGTGGCTTCCGACAGCAGCTTTGGCGTTATCAGATAAAGCAAAGCATGAGCAGACGAGGAAACTGCTGGGACAATAGTCCGATGGAGCGTTTCTTCAGAAGCTTAAAAACAGAATGGATACCGATGACCGGCTACCGAAGTATCAGTGAGGCTCGGGTTGAAATATCACGATACGTGACGGGGTATTACAGTCAGCTTAGACCGCATCAATATAACGGTGGGCTGACACCGAACGAGTCAGAGCGAAGATACTGGCTTGAATACAAAACCGTGGCCAATTT # Right flank : GTATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //