Array 1 109379-106196 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQUO01000135.1 Salmonella enterica subsp. enterica serovar Widemarsh strain CRJJGF_00058 SQ0106Contig339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109378 29 100.0 32 ............................. GCAATTCCGGGCTGGCGTCGCTGGACACGCGC 109317 29 100.0 32 ............................. ACGAGGGCGTCATCCTCAACAGTGCAGGCGAT 109256 29 100.0 32 ............................. CCGCCCCGGAAATGCCAGCCAACGCCGATTTA 109195 29 100.0 32 ............................. GACGAGCCGGAACAGCCGCCGGGCCGGGCGGC 109134 29 100.0 32 ............................. GTTATTTTCTGAGGTCGCGAATCAACGAAACT 109073 29 100.0 32 ............................. CAGGGTAAGCCGCTTAGTGATGCCTGGTGCGC 109012 29 96.6 21 ............................N NNNNNNNNNNNNNNNNNNNGC Deletion [108963] 108962 29 100.0 32 ............................. GCAACTCATCACGATCACTTACAGGTTGGCTA 108901 29 100.0 32 ............................. GTATCGATCAACACTAATTCGCCAGTGTTCAG 108840 29 100.0 32 ............................. TATGTCGACACGCCGATCCCGCATTTCACCCA 108779 29 100.0 32 ............................. TTTATCAACGGCATGGAAATGCCTTTGATTAC 108718 29 100.0 32 ............................. ATTGTTCAACGGCTGGCGGCGGCTGACGCTGC 108657 29 100.0 32 ............................. TTTAGCGATCTGATCTCCGCAGGCGAATGCAG 108596 29 100.0 32 ............................. GAACACCAGTGACAAACGTGTTGCAATAAGTT 108535 29 100.0 32 ............................. TATCCATCTCACAATGGGAGAGGGATGACAGC 108474 29 100.0 32 ............................. ACATCAAGGCCGCAGTGCGTAAACGCGGGGTG 108413 29 100.0 32 ............................. TCGCTACGGGTCGGCAGGGTCTCAATTCGAAC 108352 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 108291 29 100.0 32 ............................. CAGACCTGGCAGAAGCACAAGCCGCTGATGCT 108230 29 100.0 32 ............................. GGTTGGCCTTTACCATGCCCCTTTCATAACCC 108169 29 100.0 32 ............................. CTGAGTCAAGTGCGCGAGTCCAGGCTGAGAAA 108108 29 100.0 32 ............................. CATACGTGCGTAAGGGGTTATCGCCTCAGTAA 108047 29 100.0 32 ............................. CACGCCGCACGCGCTGGCATAGCGCAGCAGTG 107986 29 100.0 32 ............................. ACAAAATTGAGGATTTCGGCGTAAATGCTGTG 107925 29 100.0 32 ............................. AAATAAATGCCGTTATCGAAGAGGAAAAGAAA 107864 29 100.0 24 ............................. NNNNNNNNNNNNNNNNNNNNGAAA Deletion [107812] 107811 29 100.0 32 ............................. CTGGCGGAGCTGATGGGCGATGCGGGCGCATT 107750 29 100.0 32 ............................. CCAAACTGGTCAAGCTGGCGATTATCAAAAAA 107689 29 100.0 32 ............................. TGACGCTTTTTATTGATTCATTTTGCGATACG 107628 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 107567 29 100.0 32 ............................. CCAATATTAGGGATTGAAAAGGCAGAATTTAG 107506 29 100.0 32 ............................. ACACAGCCCCTAAATCAGCGCAGCCCGCGCCG 107445 29 100.0 32 ............................. CCGTGATAGTTATGAATTCCTCCGGTCGCTAC 107384 29 100.0 32 ............................. CAACGAAAAGTCGTTAAGCGTCTCATCTCCCT 107323 29 100.0 32 ............................. GTAAGCGACTGAGTATACACAGTCCGGGCACA 107262 29 100.0 32 ............................. GCAATTTTGCGGCGAACGTGCTCGCTCTCATC 107201 29 100.0 32 ............................. TTATCACCCACCAAATTAGAGACAGAAATACT 107140 29 100.0 32 ............................. TCATTACCAGAATTACCAGGGCAGGAACAGCA 107079 29 100.0 32 ............................. AGGGGAATCAATGAAAGTCAAAGCAGATCAAT 107018 29 100.0 32 ............................. AAAAACGATCGTATACGAATTATGTTTTTGTG 106957 29 100.0 32 ............................. CCGATTGAATCAATTTTGCAGGTGGTAGAGTT 106896 29 100.0 32 ............................. GAAACGATCACGACTACCCCCGAGGCGCTACG 106835 29 100.0 32 ............................. TCTCCAGAAACGTTCGCCGAAACGTTCCCGGA 106774 29 100.0 32 ............................. CAAATTAAAGTAGCTGGATTGTGGTTTTGGTT 106713 29 100.0 32 ............................. GGTTATCTCGGCTATCGCTTGCCGCATGACGG 106652 29 96.6 32 ............T................ CCTGCGGCTGGAAAGACAAACTCCGGGATGCC 106591 29 100.0 32 ............................. CGGATAGACCGCGCCACGCTGGTGGCTAAGCG 106530 29 100.0 32 ............................. ACTCCCCAATTTGTTTCTCCAGACTGATCTTC 106469 29 100.0 32 ............................. GGCCTCGTCCGGCGGATCGCTGTTTCGGACCC 106408 29 100.0 32 ............................. CGTATACGTTTCTCAACAAGAAGGCGCGTAAG 106347 29 100.0 32 ............................. GAAAACACCATTGCAGCACTCCCCAGCCAGAA 106286 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 106225 29 96.6 0 ............T................ | A [106198] ========== ====== ====== ====== ============================= ================================ ================== 53 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAACCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6876-5322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQUO01000111.1 Salmonella enterica subsp. enterica serovar Widemarsh strain CRJJGF_00058 SQ0106Contig190, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6875 29 100.0 32 ............................. GAGTGGCACGATAAAACAGAGTGGGTACAGAA 6814 29 100.0 32 ............................. GCTTTGTCGTTAATCCAAAAGGCGGAGTGCGC 6753 29 100.0 32 ............................. GCACGGAAGCCACGCTGCCTGATGGCCGGAAA 6692 29 100.0 32 ............................. TGGTTAAAAACGTAATGTTCCCTGCGTTAGCG 6631 29 100.0 32 ............................. ATCAACCCTCAAATGTGGTTATTTGCGCAGGC 6570 29 100.0 32 ............................. CCGTCAGCCGCCATCAACATGGCCTATAACGG 6509 29 100.0 33 ............................. GCTAAAGTTCTGCTGTTGCAAATACGGATATGC 6447 29 100.0 32 ............................. TGCTGAGTTTGAAATTCGCGTTTACCAGACAT 6386 29 100.0 32 ............................. GGGATTTTGGATCGCCCGGTGATAGAGAATTA 6325 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 6264 29 100.0 32 ............................. AGATCATCATTTCGCCGCGTTCACACCAGGAG 6203 29 100.0 32 ............................. GCGGTAGGATTGCTCTTCGTGAACGCACGATT 6142 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGGC 6081 29 100.0 32 ............................. AACTTATTTGATAATGAGTTCAATAAGATTCT 6020 29 100.0 32 ............................. TAATTACGTTTTTTCAACGTCTCGATAATCGC 5959 29 100.0 32 ............................. TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC 5898 29 100.0 32 ............................. GTTACTGTATTATCTCTCGCATAGACCCGGCA 5837 29 96.6 32 .............T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 5776 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 5715 29 93.1 32 .............T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 5654 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 5593 29 96.6 32 ...........................T. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 5532 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 5471 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 5410 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 5349 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGGAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATATGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //