Array 1 1104061-1105740 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022782.1 Ralstonia solanacearum strain SL3755 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1104061 29 100.0 32 ............................. AACGATGTCACACCTGAGCAGCAAAAACGATT 1104122 29 100.0 33 ............................. GTTGGTGCGGGGCTTGCGCCTATTGCCTCTGAT 1104184 29 100.0 32 ............................. CTCAGCAGTCACGATGAAGGTGGCTTCATTTC 1104245 29 100.0 32 ............................. TTGCGCCAGATCCTATGCGGGGCGGTGAAAGA 1104306 29 100.0 32 ............................. CCAGCGCCAACGGCCGGAATGCCCTTCGAACG 1104367 29 100.0 32 ............................. CGGTGTGCCTGGCGGGCGTCAGCTTCGTTGTC 1104428 29 100.0 32 ............................. GCGGCCGACCAGCTCATCGCATCTCCAGAATT 1104489 29 100.0 32 ............................. TAGCTCTGGCGTTGCGGGTAGTTGATGTTGGC 1104550 29 96.6 33 ............................A GGAGCTGGCGGCGGTCGTCGCGCGCGAGCCGAT 1104612 29 100.0 32 ............................. ATTTCCGGGATCTGCTGCATGGCGTTGTTGAC 1104673 29 100.0 31 ............................. TTATTGAGGTTAGCGTAGGAACTATATCTGC 1104733 29 100.0 32 ............................. CTTTCCAATCATCCGAACGGCAGAGATTGGTG 1104794 29 100.0 32 ............................. CCGCTCGCGCCAGCGCCGCGCGAACACGTCGA 1104855 29 100.0 32 ............................. CGGCTCGGCAAAGGCAACGCCCGCCTGGTCCT 1104916 29 100.0 32 ............................. GATGAGGCGCTGGCCCGCCAGCTCCGGCCGCT 1104977 29 100.0 32 ............................. CAGCTTGTCGCGCGCGTCATCGTCCAGACTGT 1105038 29 100.0 32 ............................. GCAATCAAGGTCGCCATCCTTGGTCAGCCACC 1105099 29 100.0 32 ............................. GCATCAGTTTCGTTCCATGCAGATGCCACGGC 1105160 29 100.0 32 ............................. GCCATTGCACATGGCCGAGCGGCCCCGCCGCT 1105221 29 100.0 32 ............................. TCGCCCGGCGTCGGCACGGCGGCCTTGACGAT 1105282 29 100.0 32 ............................. GCGACGCGAACCTGAGCGACGCGTACCTGAGC 1105343 29 100.0 32 ............................. CAACCGCCATCCTCGCCTAGCCGGTATTGGTT 1105404 29 100.0 32 ............................. CGTTCGTTTCGTACAAGGGGCTTGAATACTCG 1105465 29 100.0 32 ............................. AACGGGATCGTCATCCACGACAACATCATGCA 1105526 29 100.0 32 ............................. CTTCATGGGACTGTCAGACGCTGGAATCCCGA 1105587 29 100.0 32 ............................. AACTCGATTGAGGCGTACGGCGCCTCAGGCAA 1105648 29 93.1 32 ............CA............... CCCATGATCTGAAACAGGCCCCAGCTCGCCGA 1105709 29 86.2 0 ............CA..........T...A | A,TC [1105732,1105734] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.1 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGGCGGGTTGGGTACTTTGTCGACTGCGTGAGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGACGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : AACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAACCAAAATAAATACCCGCAAGACTGCTACGATCCCCAGCTCGGGAGCAGGCACAGATCGTCAAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGCGTCGCAATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGTTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1115105-1118789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022782.1 Ralstonia solanacearum strain SL3755 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1115105 29 100.0 32 ............................. CCAATGCCGGCCGAGATAGCGGCTACGGTGGT 1115166 29 100.0 32 ............................. TCGTGGGCGGGCAAGGGGCGTTATACGCCAAG 1115227 29 100.0 32 ............................. TCGGATTGATTGCGCTTGATCCATGCGATCAG 1115288 29 100.0 32 ............................. TGCAGCTCTCGAAAACCGAGAGCGGCGTGCAA 1115349 29 100.0 32 ............................. CGTTCATAGACCGTCACCACGTCCGCGGGCTG 1115410 29 96.6 32 ............................C GCTTGGGCATTGCCGACAACCTGCAACCGGAC 1115471 29 100.0 32 ............................. TCGATTCCGATGGGATTTGTCGACCTGGATGA 1115532 29 100.0 32 ............................. ATTGGGCATCAGCAGGTCGAGCCGGGGGCGGA 1115593 29 100.0 32 ............................. TCTACGAGCACCAGCAGGCTACGGCCGATTTT 1115654 29 100.0 32 ............................. CCGTTCTGCCCGGTGCTCACGATCGGCGCGGT 1115715 29 100.0 32 ............................. AGCGCGTCAAATCCGAGCCGGTGAAGGCCAGC 1115776 29 100.0 32 ............................. CGCCAAGCCCCCATGCCACCAGCAACGCCCTC 1115837 29 100.0 32 ............................. TAGCCATGTTCCCACTGCTGGGCATGCTCGCT 1115898 29 100.0 32 ............................. TCCGGCGTGTATCCGACCAGTACGCCGTCACT 1115959 29 100.0 32 ............................. CTACGGTTGAGTTGGGCCAGCGCGACGATCGG 1116020 29 100.0 32 ............................. GAATTGGGCGCACTGAGCAACGGCCTGCACGC 1116081 29 100.0 32 ............................. TTGATCGAGATGCTGCGTCTCGTCCAGGACCC 1116142 29 100.0 32 ............................. GACTACGCGGCCGCGCAGAGGCGCATCCGTGA 1116203 29 100.0 32 ............................. TTCGGTAGCCTTGGCTGCATCGATCTCACGCA 1116264 29 100.0 32 ............................. TAGACGAGGCCCAGCGCGCCCTGTCGGCGCTG 1116325 29 100.0 32 ............................. TACCTGCTCGACGGTTTTTTCGGAGCCATCAT 1116386 29 100.0 32 ............................. CGCTTGGCGCTGTTCGCCCGGCGGTCGTCTGG 1116447 29 100.0 32 ............................. AACCGCAGCGAGGTGATCCTTGCGCACACGCC 1116508 29 100.0 32 ............................. GCGATCATCTGGGCTGGGGTCTTCTTCCCGGC 1116569 29 100.0 32 ............................. CGCGTTCACTTCGCGCACGGCGGCAACCTGAC 1116630 29 96.6 33 ............................A GACGTGAGCGAGGGCGAGGACGTGACCTACCTG 1116692 29 100.0 32 ............................. AAGAGCCAGGCCGCTCCTGGCGCACCGAACTT 1116753 29 100.0 32 ............................. ATTGACCAGCAGGAAGAGGTCATCAAGCGCGC 1116814 29 100.0 32 ............................. TAGTTCAGGATGTCCCACTCGGACCGCTCATC 1116875 29 100.0 32 ............................. TAATCGGAGGCCGCAATGGGGCTCTTCGACTA 1116936 29 100.0 32 ............................. GGGCCCGTCATCTGCATCGTGATCGATGTGGC 1116997 29 100.0 32 ............................. TTCTGCGGCACCTCGACCATCGGCAGTTCTTC 1117058 29 100.0 32 ............................. GTGGTGTTCGGCGCCTTCACCAGCACGTTCGC 1117119 29 100.0 32 ............................. CCATTGTCGGGCAAGCCCGACGTGAGCCATCC 1117180 29 100.0 32 ............................. TCGGCGCTCCAATCCCCGCGATCCATGCCGTC 1117241 29 100.0 32 ............................. CCAGGCGGTGCAGCTGACGGGATCGGTGGTGC 1117302 29 100.0 32 ............................. CGGCCATCGAGAACGCGCTGGCGATGCTGGCA 1117363 29 100.0 32 ............................. CGGCTTTATATGCCGGCCGGCAGCTGCTACAT 1117424 29 96.6 32 ............................A TCGCAGATCATCGAGGACGGCCCGCTCCACAA 1117485 29 100.0 31 ............................. GGGATGGTGAGGACCTTGCCCCCCGGCGCCA 1117545 29 100.0 28 ............................. GTGGCCAGCATGTCGCTCGCCAGCGCGC 1117602 29 100.0 32 ............................. TCCTCTGAGTATCTCGGGCTGCTCAATCAGAC 1117663 29 100.0 32 ............................. TTGATGCGGGTCAGGAAATCGCTCGACTCCTG 1117724 29 100.0 32 ............................. TCCATCACCATGGCCTGCTGGTCGAGCAGCTT 1117785 29 100.0 32 ............................. CGTGCAGCGCGCCAGGCGCGGTAGATAGCATC 1117846 29 100.0 32 ............................. CCGCCCGTGGCCTGCCAGCACGTCGCCATCGG 1117907 29 100.0 32 ............................. CTGCCGGCATCGCAGGCAGCTTTATGCAGGAA 1117968 29 100.0 32 ............................. ACTCGGAGATCGAACGATTCATCGAGGCATCC 1118029 29 100.0 32 ............................. TCGCGGCGGTCGGCGCAGTTGTCGTGATTGTG 1118090 29 100.0 32 ............................. TACGGTGATGTTGCGGCAACGAAGGTCGCGGA 1118151 29 100.0 32 ............................. GGAGTAGTCATGGATGAATACGATGTGGACCT 1118212 29 100.0 32 ............................. TCGCGGCGGTCGGCGCAGTTGTCGTGATTGTG 1118273 29 100.0 32 ............................. TCGGCAACCTTTAGCGCCATCAAATCGTCCAG 1118334 29 100.0 32 ............................. ATGAGCTACCTGGACGCGATGAAGACAGCGCT 1118395 29 100.0 32 ............................. ACGCGCCGTGCGTCAAGCAAACGGGTATCGAT 1118456 29 100.0 32 ............................. CACGGGACCGGCGCGCTGAACATGACCCGCCA 1118517 29 100.0 32 ............................. GCAAGAAGGTTAAAACTGGAATTGTCATTCCG 1118578 29 100.0 32 ............................. AAACCGGAGGAAGGCAAGGGCATGGACGCCAA 1118639 29 100.0 32 ............................. GAAGGCGATACCCTGCTGCTGAACCTGCCGGA 1118700 29 100.0 32 ............................. CCGCGCGAGGTCTGGGCGGCCGAGTTCCGCGA 1118761 29 89.7 0 ........T.........A..G....... | ========== ====== ====== ====== ============================= ================================= ================== 61 29 99.7 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : GGTCGCATCATTCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGTACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGTGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : GGGTTAGTCGCTGAAGCTTGTCCAGATGGTCGTGTACTTCCCGCGCATTGCGGGGATACCCCGCCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGCAGCCACCGAGCCTTCCAGCGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTGGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //