Array 1 233076-232271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPU010000004.1 Salmonella sp. 32040203-2019-00127 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 233075 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 233014 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 232953 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 232892 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 232831 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 232769 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 232666 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 232605 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 232544 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 232483 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 232422 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 232361 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 232300 29 96.6 0 A............................ | A [232273] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 251617-249208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPU010000004.1 Salmonella sp. 32040203-2019-00127 NODE_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 251616 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 251555 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 251494 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 251433 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 251372 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 251311 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 251250 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 251189 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 251128 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 251067 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 251006 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 250945 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 250884 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 250823 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 250762 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 250701 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 250640 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 250579 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 250518 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 250457 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 250396 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 250335 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 250274 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 250213 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 250151 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 250090 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 250029 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 249968 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 249907 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 249846 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 249785 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 249723 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 249662 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 249601 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 249540 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 249479 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 249418 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 249357 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 249296 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 249235 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 40 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //